miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16292 3' -51.4 NC_004084.1 + 34851 0.66 0.93542
Target:  5'- cUCGACGAcaGCGggGAgCG-CGAUAUCGu -3'
miRNA:   3'- cAGCUGCU--CGCa-CU-GCaGCUAUAGCu -5'
16292 3' -51.4 NC_004084.1 + 14648 0.66 0.929943
Target:  5'- -cCGGCGAGCGcccaGUCGAUGcccgCGAg -3'
miRNA:   3'- caGCUGCUCGCacugCAGCUAUa---GCU- -5'
16292 3' -51.4 NC_004084.1 + 35967 0.66 0.929943
Target:  5'- cGUCG-CGAGCGcccccgaaGACGgCGGUAUUGGc -3'
miRNA:   3'- -CAGCuGCUCGCa-------CUGCaGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 37162 0.66 0.929943
Target:  5'- -gCGACGAGCucggGGCGuUCGAcaucAUCGAg -3'
miRNA:   3'- caGCUGCUCGca--CUGC-AGCUa---UAGCU- -5'
16292 3' -51.4 NC_004084.1 + 44949 0.66 0.924184
Target:  5'- cGUCGACGAGaacGGCGUUcGUcgCGAg -3'
miRNA:   3'- -CAGCUGCUCgcaCUGCAGcUAuaGCU- -5'
16292 3' -51.4 NC_004084.1 + 18156 0.66 0.918144
Target:  5'- -cCGGCGAGUG-GACGaUgGAgAUCGAg -3'
miRNA:   3'- caGCUGCUCGCaCUGC-AgCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 49866 0.66 0.911824
Target:  5'- uGUCGGacucGGUGagGACGUCGAUcUCGAg -3'
miRNA:   3'- -CAGCUgc--UCGCa-CUGCAGCUAuAGCU- -5'
16292 3' -51.4 NC_004084.1 + 6915 0.67 0.905226
Target:  5'- cUCGACGAGCucccacucuugGUGAaggaGUCGAUGgaacCGGu -3'
miRNA:   3'- cAGCUGCUCG-----------CACUg---CAGCUAUa---GCU- -5'
16292 3' -51.4 NC_004084.1 + 16756 0.67 0.904551
Target:  5'- cUCGAUGAcguuguucgcccgGCGUuugaacucGACGUCGAUGUCc- -3'
miRNA:   3'- cAGCUGCU-------------CGCA--------CUGCAGCUAUAGcu -5'
16292 3' -51.4 NC_004084.1 + 21173 0.67 0.898352
Target:  5'- cUCGACGAGCGccggGACG-CGGUucuUCu- -3'
miRNA:   3'- cAGCUGCUCGCa---CUGCaGCUAu--AGcu -5'
16292 3' -51.4 NC_004084.1 + 661 0.67 0.898352
Target:  5'- cGUCGugGuaGGUGUgGAUGUCGGcuucGUCGAc -3'
miRNA:   3'- -CAGCugC--UCGCA-CUGCAGCUa---UAGCU- -5'
16292 3' -51.4 NC_004084.1 + 20065 0.67 0.896945
Target:  5'- uGUCGAUaccgacgacgccgGAGCGaaccgGAagacgacCGUCGAUAUCGAc -3'
miRNA:   3'- -CAGCUG-------------CUCGCa----CU-------GCAGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 4234 0.67 0.891207
Target:  5'- aUCGACGAG-GaGGCGUCGuuccUCGAg -3'
miRNA:   3'- cAGCUGCUCgCaCUGCAGCuau-AGCU- -5'
16292 3' -51.4 NC_004084.1 + 7171 0.67 0.891207
Target:  5'- gGUCGGuCGcAGCGauccgGACGUCGAgcugcUCGAc -3'
miRNA:   3'- -CAGCU-GC-UCGCa----CUGCAGCUau---AGCU- -5'
16292 3' -51.4 NC_004084.1 + 41785 0.67 0.891207
Target:  5'- cGUCGACGA-CGagGGCGUCacgAUCGAc -3'
miRNA:   3'- -CAGCUGCUcGCa-CUGCAGcuaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 8585 0.67 0.883794
Target:  5'- cGUCGACGAGUGauucgaUGAacuCGUCGAggcuguccUCGAg -3'
miRNA:   3'- -CAGCUGCUCGC------ACU---GCAGCUau------AGCU- -5'
16292 3' -51.4 NC_004084.1 + 5342 0.67 0.876898
Target:  5'- cGUCGcCGAGCGggcggcgaggacuggGACGaucUCGAcGUCGAa -3'
miRNA:   3'- -CAGCuGCUCGCa--------------CUGC---AGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 46287 0.67 0.876118
Target:  5'- cGUCGACgGAGuCGUaGuCGUCGAcGUUGAc -3'
miRNA:   3'- -CAGCUG-CUC-GCA-CuGCAGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 30342 0.67 0.876118
Target:  5'- cGUCGGCGAG-GUGGcCGaCGGcGUCGGa -3'
miRNA:   3'- -CAGCUGCUCgCACU-GCaGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 12147 0.68 0.860006
Target:  5'- cGUCGACGaAGCGaugGAUGUCGcacaCGAg -3'
miRNA:   3'- -CAGCUGC-UCGCa--CUGCAGCuauaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.