Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16292 | 3' | -51.4 | NC_004084.1 | + | 38309 | 1.09 | 0.003086 |
Target: 5'- cGUCGACGAGCGUGACGUCGAUAUCGAc -3' miRNA: 3'- -CAGCUGCUCGCACUGCAGCUAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 16943 | 0.81 | 0.235481 |
Target: 5'- aUCGGCGGGCGUcgcGACGUCGGgucuUCGAg -3' miRNA: 3'- cAGCUGCUCGCA---CUGCAGCUau--AGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 30417 | 0.77 | 0.361356 |
Target: 5'- cGUCGACGGGCGgcGACGgaagCGAUggCGAg -3' miRNA: 3'- -CAGCUGCUCGCa-CUGCa---GCUAuaGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 41386 | 0.75 | 0.485068 |
Target: 5'- aUCGACGGGCGcaGACGcUCGGUcgCGGa -3' miRNA: 3'- cAGCUGCUCGCa-CUGC-AGCUAuaGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 2021 | 0.74 | 0.548604 |
Target: 5'- aUCGGgagcCGAGCGUcuccgaGAgGUCGAUGUCGAu -3' miRNA: 3'- cAGCU----GCUCGCA------CUgCAGCUAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 55347 | 0.73 | 0.570389 |
Target: 5'- cGUCGACGAGCGgccCGUCGA---CGAg -3' miRNA: 3'- -CAGCUGCUCGCacuGCAGCUauaGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 40880 | 0.72 | 0.614505 |
Target: 5'- cGUCGACGcuCGUGACGccuucaacaUCGAUAUCcGAc -3' miRNA: 3'- -CAGCUGCucGCACUGC---------AGCUAUAG-CU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 36814 | 0.72 | 0.614505 |
Target: 5'- cUCGACGAGCGUcGACGaaCGccgAUCGAa -3' miRNA: 3'- cAGCUGCUCGCA-CUGCa-GCua-UAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 1728 | 0.71 | 0.691903 |
Target: 5'- -gCGAguCGAGCGUGGCGUaGAUGaCGAa -3' miRNA: 3'- caGCU--GCUCGCACUGCAgCUAUaGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 45423 | 0.71 | 0.713655 |
Target: 5'- cGUCGAuCGAGcCG-GAUGUCGGUG-CGAc -3' miRNA: 3'- -CAGCU-GCUC-GCaCUGCAGCUAUaGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 47774 | 0.71 | 0.724415 |
Target: 5'- aUCGACGccGCGuUGAUGUCGGUGagGAg -3' miRNA: 3'- cAGCUGCu-CGC-ACUGCAGCUAUagCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 18024 | 0.71 | 0.669917 |
Target: 5'- -aCGGCGAGUGUGAUGUgGuccgagaccAUGUCGGc -3' miRNA: 3'- caGCUGCUCGCACUGCAgC---------UAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 28120 | 0.71 | 0.724415 |
Target: 5'- cUCGACGAGCGcgucaaUGACGUCcucGUcUCGAu -3' miRNA: 3'- cAGCUGCUCGC------ACUGCAGc--UAuAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 14080 | 0.7 | 0.776576 |
Target: 5'- -gCGAcCGA-CGUaGACGUCGAUGUCGu -3' miRNA: 3'- caGCU-GCUcGCA-CUGCAGCUAUAGCu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 35836 | 0.7 | 0.745642 |
Target: 5'- cGUCGGCGA-CGUcGugGUagcUGAUAUCGAc -3' miRNA: 3'- -CAGCUGCUcGCA-CugCA---GCUAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 30930 | 0.7 | 0.756086 |
Target: 5'- cGUCGAuCGcuCGUcGACGUCGAgcUCGAg -3' miRNA: 3'- -CAGCU-GCucGCA-CUGCAGCUauAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 5504 | 0.7 | 0.756086 |
Target: 5'- aGUCGACGAGUcguuccuaguggGUGGCGagGAacUCGAc -3' miRNA: 3'- -CAGCUGCUCG------------CACUGCagCUauAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 42026 | 0.69 | 0.806143 |
Target: 5'- cGUCG-CGAGCGaGGCGgUCGAcAUCGu -3' miRNA: 3'- -CAGCuGCUCGCaCUGC-AGCUaUAGCu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 48036 | 0.69 | 0.806143 |
Target: 5'- -aCGACGAGCucGACGUCGAacUCa- -3' miRNA: 3'- caGCUGCUCGcaCUGCAGCUauAGcu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 6120 | 0.69 | 0.815643 |
Target: 5'- -aCGAUGAGC-UGugGUCGuucGUCGGu -3' miRNA: 3'- caGCUGCUCGcACugCAGCua-UAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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