Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 16292 | 3' | -51.4 | NC_004084.1 | + | 18156 | 0.66 | 0.918144 |
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Target: 5'- -cCGGCGAGUG-GACGaUgGAgAUCGAg -3' miRNA: 3'- caGCUGCUCGCaCUGC-AgCUaUAGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 44949 | 0.66 | 0.924184 |
|
Target: 5'- cGUCGACGAGaacGGCGUUcGUcgCGAg -3' miRNA: 3'- -CAGCUGCUCgcaCUGCAGcUAuaGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 37162 | 0.66 | 0.929943 |
|
Target: 5'- -gCGACGAGCucggGGCGuUCGAcaucAUCGAg -3' miRNA: 3'- caGCUGCUCGca--CUGC-AGCUa---UAGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 35967 | 0.66 | 0.929943 |
|
Target: 5'- cGUCG-CGAGCGcccccgaaGACGgCGGUAUUGGc -3' miRNA: 3'- -CAGCuGCUCGCa-------CUGCaGCUAUAGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 34851 | 0.66 | 0.93542 |
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Target: 5'- cUCGACGAcaGCGggGAgCG-CGAUAUCGu -3' miRNA: 3'- cAGCUGCU--CGCa-CU-GCaGCUAUAGCu -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 49866 | 0.66 | 0.911824 |
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Target: 5'- uGUCGGacucGGUGagGACGUCGAUcUCGAg -3' miRNA: 3'- -CAGCUgc--UCGCa-CUGCAGCUAuAGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 14648 | 0.66 | 0.929943 |
|
Target: 5'- -cCGGCGAGCGcccaGUCGAUGcccgCGAg -3' miRNA: 3'- caGCUGCUCGCacugCAGCUAUa---GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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