miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16292 3' -51.4 NC_004084.1 + 38309 1.09 0.003086
Target:  5'- cGUCGACGAGCGUGACGUCGAUAUCGAc -3'
miRNA:   3'- -CAGCUGCUCGCACUGCAGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 16943 0.81 0.235481
Target:  5'- aUCGGCGGGCGUcgcGACGUCGGgucuUCGAg -3'
miRNA:   3'- cAGCUGCUCGCA---CUGCAGCUau--AGCU- -5'
16292 3' -51.4 NC_004084.1 + 30417 0.77 0.361356
Target:  5'- cGUCGACGGGCGgcGACGgaagCGAUggCGAg -3'
miRNA:   3'- -CAGCUGCUCGCa-CUGCa---GCUAuaGCU- -5'
16292 3' -51.4 NC_004084.1 + 41386 0.75 0.485068
Target:  5'- aUCGACGGGCGcaGACGcUCGGUcgCGGa -3'
miRNA:   3'- cAGCUGCUCGCa-CUGC-AGCUAuaGCU- -5'
16292 3' -51.4 NC_004084.1 + 2021 0.74 0.548604
Target:  5'- aUCGGgagcCGAGCGUcuccgaGAgGUCGAUGUCGAu -3'
miRNA:   3'- cAGCU----GCUCGCA------CUgCAGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 55347 0.73 0.570389
Target:  5'- cGUCGACGAGCGgccCGUCGA---CGAg -3'
miRNA:   3'- -CAGCUGCUCGCacuGCAGCUauaGCU- -5'
16292 3' -51.4 NC_004084.1 + 40880 0.72 0.614505
Target:  5'- cGUCGACGcuCGUGACGccuucaacaUCGAUAUCcGAc -3'
miRNA:   3'- -CAGCUGCucGCACUGC---------AGCUAUAG-CU- -5'
16292 3' -51.4 NC_004084.1 + 36814 0.72 0.614505
Target:  5'- cUCGACGAGCGUcGACGaaCGccgAUCGAa -3'
miRNA:   3'- cAGCUGCUCGCA-CUGCa-GCua-UAGCU- -5'
16292 3' -51.4 NC_004084.1 + 18024 0.71 0.669917
Target:  5'- -aCGGCGAGUGUGAUGUgGuccgagaccAUGUCGGc -3'
miRNA:   3'- caGCUGCUCGCACUGCAgC---------UAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 1728 0.71 0.691903
Target:  5'- -gCGAguCGAGCGUGGCGUaGAUGaCGAa -3'
miRNA:   3'- caGCU--GCUCGCACUGCAgCUAUaGCU- -5'
16292 3' -51.4 NC_004084.1 + 45423 0.71 0.713655
Target:  5'- cGUCGAuCGAGcCG-GAUGUCGGUG-CGAc -3'
miRNA:   3'- -CAGCU-GCUC-GCaCUGCAGCUAUaGCU- -5'
16292 3' -51.4 NC_004084.1 + 47774 0.71 0.724415
Target:  5'- aUCGACGccGCGuUGAUGUCGGUGagGAg -3'
miRNA:   3'- cAGCUGCu-CGC-ACUGCAGCUAUagCU- -5'
16292 3' -51.4 NC_004084.1 + 28120 0.71 0.724415
Target:  5'- cUCGACGAGCGcgucaaUGACGUCcucGUcUCGAu -3'
miRNA:   3'- cAGCUGCUCGC------ACUGCAGc--UAuAGCU- -5'
16292 3' -51.4 NC_004084.1 + 35836 0.7 0.745642
Target:  5'- cGUCGGCGA-CGUcGugGUagcUGAUAUCGAc -3'
miRNA:   3'- -CAGCUGCUcGCA-CugCA---GCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 30930 0.7 0.756086
Target:  5'- cGUCGAuCGcuCGUcGACGUCGAgcUCGAg -3'
miRNA:   3'- -CAGCU-GCucGCA-CUGCAGCUauAGCU- -5'
16292 3' -51.4 NC_004084.1 + 5504 0.7 0.756086
Target:  5'- aGUCGACGAGUcguuccuaguggGUGGCGagGAacUCGAc -3'
miRNA:   3'- -CAGCUGCUCG------------CACUGCagCUauAGCU- -5'
16292 3' -51.4 NC_004084.1 + 14080 0.7 0.776576
Target:  5'- -gCGAcCGA-CGUaGACGUCGAUGUCGu -3'
miRNA:   3'- caGCU-GCUcGCA-CUGCAGCUAUAGCu -5'
16292 3' -51.4 NC_004084.1 + 31386 0.69 0.786599
Target:  5'- cUCGACgGGGCGgacuACGcCGAUAUCGGc -3'
miRNA:   3'- cAGCUG-CUCGCac--UGCaGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 42026 0.69 0.806143
Target:  5'- cGUCG-CGAGCGaGGCGgUCGAcAUCGu -3'
miRNA:   3'- -CAGCuGCUCGCaCUGC-AGCUaUAGCu -5'
16292 3' -51.4 NC_004084.1 + 45668 0.69 0.806143
Target:  5'- -aCGACGAGaCGgucGGCGUCGAcgagAUCGu -3'
miRNA:   3'- caGCUGCUC-GCa--CUGCAGCUa---UAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.