Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16292 | 3' | -51.4 | NC_004084.1 | + | 45668 | 0.69 | 0.806143 |
Target: 5'- -aCGACGAGaCGgucGGCGUCGAcgagAUCGu -3' miRNA: 3'- caGCUGCUC-GCa--CUGCAGCUa---UAGCu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 6120 | 0.69 | 0.815643 |
Target: 5'- -aCGAUGAGC-UGugGUCGuucGUCGGu -3' miRNA: 3'- caGCUGCUCGcACugCAGCua-UAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 32418 | 0.68 | 0.833145 |
Target: 5'- cGUCGACGAGCucgcacucGUcgcgaacGAgGUCGAgGUCGAu -3' miRNA: 3'- -CAGCUGCUCG--------CA-------CUgCAGCUaUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 55270 | 0.68 | 0.834045 |
Target: 5'- gGUCGGCG-GCGUGuagauCGUCagcugcGUAUCGAu -3' miRNA: 3'- -CAGCUGCuCGCACu----GCAGc-----UAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 38434 | 0.68 | 0.851583 |
Target: 5'- cUCGAgCGAacGCGcGACGUCGAcGUCGu -3' miRNA: 3'- cAGCU-GCU--CGCaCUGCAGCUaUAGCu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 56116 | 0.68 | 0.860006 |
Target: 5'- cGUCGACGucguGCGccgcagUGuCGUCGGcGUCGAc -3' miRNA: 3'- -CAGCUGCu---CGC------ACuGCAGCUaUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 11836 | 0.68 | 0.860006 |
Target: 5'- gGUCGAaucGCcUGACGgCGAUAUCGAg -3' miRNA: 3'- -CAGCUgcuCGcACUGCaGCUAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 12147 | 0.68 | 0.860006 |
Target: 5'- cGUCGACGaAGCGaugGAUGUCGcacaCGAg -3' miRNA: 3'- -CAGCUGC-UCGCa--CUGCAGCuauaGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 30342 | 0.67 | 0.876118 |
Target: 5'- cGUCGGCGAG-GUGGcCGaCGGcGUCGGa -3' miRNA: 3'- -CAGCUGCUCgCACU-GCaGCUaUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 46287 | 0.67 | 0.876118 |
Target: 5'- cGUCGACgGAGuCGUaGuCGUCGAcGUUGAc -3' miRNA: 3'- -CAGCUG-CUC-GCA-CuGCAGCUaUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 5342 | 0.67 | 0.876898 |
Target: 5'- cGUCGcCGAGCGggcggcgaggacuggGACGaucUCGAcGUCGAa -3' miRNA: 3'- -CAGCuGCUCGCa--------------CUGC---AGCUaUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 8585 | 0.67 | 0.883794 |
Target: 5'- cGUCGACGAGUGauucgaUGAacuCGUCGAggcuguccUCGAg -3' miRNA: 3'- -CAGCUGCUCGC------ACU---GCAGCUau------AGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 7171 | 0.67 | 0.891207 |
Target: 5'- gGUCGGuCGcAGCGauccgGACGUCGAgcugcUCGAc -3' miRNA: 3'- -CAGCU-GC-UCGCa----CUGCAGCUau---AGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 4234 | 0.67 | 0.891207 |
Target: 5'- aUCGACGAG-GaGGCGUCGuuccUCGAg -3' miRNA: 3'- cAGCUGCUCgCaCUGCAGCuau-AGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 41785 | 0.67 | 0.891207 |
Target: 5'- cGUCGACGA-CGagGGCGUCacgAUCGAc -3' miRNA: 3'- -CAGCUGCUcGCa-CUGCAGcuaUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 20065 | 0.67 | 0.896945 |
Target: 5'- uGUCGAUaccgacgacgccgGAGCGaaccgGAagacgacCGUCGAUAUCGAc -3' miRNA: 3'- -CAGCUG-------------CUCGCa----CU-------GCAGCUAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 661 | 0.67 | 0.898352 |
Target: 5'- cGUCGugGuaGGUGUgGAUGUCGGcuucGUCGAc -3' miRNA: 3'- -CAGCugC--UCGCA-CUGCAGCUa---UAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 21173 | 0.67 | 0.898352 |
Target: 5'- cUCGACGAGCGccggGACG-CGGUucuUCu- -3' miRNA: 3'- cAGCUGCUCGCa---CUGCaGCUAu--AGcu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 16756 | 0.67 | 0.904551 |
Target: 5'- cUCGAUGAcguuguucgcccgGCGUuugaacucGACGUCGAUGUCc- -3' miRNA: 3'- cAGCUGCU-------------CGCA--------CUGCAGCUAUAGcu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 6915 | 0.67 | 0.905226 |
Target: 5'- cUCGACGAGCucccacucuugGUGAaggaGUCGAUGgaacCGGu -3' miRNA: 3'- cAGCUGCUCG-----------CACUg---CAGCUAUa---GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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