miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16292 3' -51.4 NC_004084.1 + 45668 0.69 0.806143
Target:  5'- -aCGACGAGaCGgucGGCGUCGAcgagAUCGu -3'
miRNA:   3'- caGCUGCUC-GCa--CUGCAGCUa---UAGCu -5'
16292 3' -51.4 NC_004084.1 + 6120 0.69 0.815643
Target:  5'- -aCGAUGAGC-UGugGUCGuucGUCGGu -3'
miRNA:   3'- caGCUGCUCGcACugCAGCua-UAGCU- -5'
16292 3' -51.4 NC_004084.1 + 32418 0.68 0.833145
Target:  5'- cGUCGACGAGCucgcacucGUcgcgaacGAgGUCGAgGUCGAu -3'
miRNA:   3'- -CAGCUGCUCG--------CA-------CUgCAGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 55270 0.68 0.834045
Target:  5'- gGUCGGCG-GCGUGuagauCGUCagcugcGUAUCGAu -3'
miRNA:   3'- -CAGCUGCuCGCACu----GCAGc-----UAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 38434 0.68 0.851583
Target:  5'- cUCGAgCGAacGCGcGACGUCGAcGUCGu -3'
miRNA:   3'- cAGCU-GCU--CGCaCUGCAGCUaUAGCu -5'
16292 3' -51.4 NC_004084.1 + 56116 0.68 0.860006
Target:  5'- cGUCGACGucguGCGccgcagUGuCGUCGGcGUCGAc -3'
miRNA:   3'- -CAGCUGCu---CGC------ACuGCAGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 11836 0.68 0.860006
Target:  5'- gGUCGAaucGCcUGACGgCGAUAUCGAg -3'
miRNA:   3'- -CAGCUgcuCGcACUGCaGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 12147 0.68 0.860006
Target:  5'- cGUCGACGaAGCGaugGAUGUCGcacaCGAg -3'
miRNA:   3'- -CAGCUGC-UCGCa--CUGCAGCuauaGCU- -5'
16292 3' -51.4 NC_004084.1 + 30342 0.67 0.876118
Target:  5'- cGUCGGCGAG-GUGGcCGaCGGcGUCGGa -3'
miRNA:   3'- -CAGCUGCUCgCACU-GCaGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 46287 0.67 0.876118
Target:  5'- cGUCGACgGAGuCGUaGuCGUCGAcGUUGAc -3'
miRNA:   3'- -CAGCUG-CUC-GCA-CuGCAGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 5342 0.67 0.876898
Target:  5'- cGUCGcCGAGCGggcggcgaggacuggGACGaucUCGAcGUCGAa -3'
miRNA:   3'- -CAGCuGCUCGCa--------------CUGC---AGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 8585 0.67 0.883794
Target:  5'- cGUCGACGAGUGauucgaUGAacuCGUCGAggcuguccUCGAg -3'
miRNA:   3'- -CAGCUGCUCGC------ACU---GCAGCUau------AGCU- -5'
16292 3' -51.4 NC_004084.1 + 7171 0.67 0.891207
Target:  5'- gGUCGGuCGcAGCGauccgGACGUCGAgcugcUCGAc -3'
miRNA:   3'- -CAGCU-GC-UCGCa----CUGCAGCUau---AGCU- -5'
16292 3' -51.4 NC_004084.1 + 4234 0.67 0.891207
Target:  5'- aUCGACGAG-GaGGCGUCGuuccUCGAg -3'
miRNA:   3'- cAGCUGCUCgCaCUGCAGCuau-AGCU- -5'
16292 3' -51.4 NC_004084.1 + 41785 0.67 0.891207
Target:  5'- cGUCGACGA-CGagGGCGUCacgAUCGAc -3'
miRNA:   3'- -CAGCUGCUcGCa-CUGCAGcuaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 20065 0.67 0.896945
Target:  5'- uGUCGAUaccgacgacgccgGAGCGaaccgGAagacgacCGUCGAUAUCGAc -3'
miRNA:   3'- -CAGCUG-------------CUCGCa----CU-------GCAGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 661 0.67 0.898352
Target:  5'- cGUCGugGuaGGUGUgGAUGUCGGcuucGUCGAc -3'
miRNA:   3'- -CAGCugC--UCGCA-CUGCAGCUa---UAGCU- -5'
16292 3' -51.4 NC_004084.1 + 21173 0.67 0.898352
Target:  5'- cUCGACGAGCGccggGACG-CGGUucuUCu- -3'
miRNA:   3'- cAGCUGCUCGCa---CUGCaGCUAu--AGcu -5'
16292 3' -51.4 NC_004084.1 + 16756 0.67 0.904551
Target:  5'- cUCGAUGAcguuguucgcccgGCGUuugaacucGACGUCGAUGUCc- -3'
miRNA:   3'- cAGCUGCU-------------CGCA--------CUGCAGCUAUAGcu -5'
16292 3' -51.4 NC_004084.1 + 6915 0.67 0.905226
Target:  5'- cUCGACGAGCucccacucuugGUGAaggaGUCGAUGgaacCGGu -3'
miRNA:   3'- cAGCUGCUCG-----------CACUg---CAGCUAUa---GCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.