Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 16292 | 3' | -51.4 | NC_004084.1 | + | 40880 | 0.72 | 0.614505 |
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Target: 5'- cGUCGACGcuCGUGACGccuucaacaUCGAUAUCcGAc -3' miRNA: 3'- -CAGCUGCucGCACUGC---------AGCUAUAG-CU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 55347 | 0.73 | 0.570389 |
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Target: 5'- cGUCGACGAGCGgccCGUCGA---CGAg -3' miRNA: 3'- -CAGCUGCUCGCacuGCAGCUauaGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 2021 | 0.74 | 0.548604 |
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Target: 5'- aUCGGgagcCGAGCGUcuccgaGAgGUCGAUGUCGAu -3' miRNA: 3'- cAGCU----GCUCGCA------CUgCAGCUAUAGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 41386 | 0.75 | 0.485068 |
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Target: 5'- aUCGACGGGCGcaGACGcUCGGUcgCGGa -3' miRNA: 3'- cAGCUGCUCGCa-CUGC-AGCUAuaGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 30417 | 0.77 | 0.361356 |
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Target: 5'- cGUCGACGGGCGgcGACGgaagCGAUggCGAg -3' miRNA: 3'- -CAGCUGCUCGCa-CUGCa---GCUAuaGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 16943 | 0.81 | 0.235481 |
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Target: 5'- aUCGGCGGGCGUcgcGACGUCGGgucuUCGAg -3' miRNA: 3'- cAGCUGCUCGCA---CUGCAGCUau--AGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 38309 | 1.09 | 0.003086 |
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Target: 5'- cGUCGACGAGCGUGACGUCGAUAUCGAc -3' miRNA: 3'- -CAGCUGCUCGCACUGCAGCUAUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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