miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16292 3' -51.4 NC_004084.1 + 28120 0.71 0.724415
Target:  5'- cUCGACGAGCGcgucaaUGACGUCcucGUcUCGAu -3'
miRNA:   3'- cAGCUGCUCGC------ACUGCAGc--UAuAGCU- -5'
16292 3' -51.4 NC_004084.1 + 30342 0.67 0.876118
Target:  5'- cGUCGGCGAG-GUGGcCGaCGGcGUCGGa -3'
miRNA:   3'- -CAGCUGCUCgCACU-GCaGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 30417 0.77 0.361356
Target:  5'- cGUCGACGGGCGgcGACGgaagCGAUggCGAg -3'
miRNA:   3'- -CAGCUGCUCGCa-CUGCa---GCUAuaGCU- -5'
16292 3' -51.4 NC_004084.1 + 30930 0.7 0.756086
Target:  5'- cGUCGAuCGcuCGUcGACGUCGAgcUCGAg -3'
miRNA:   3'- -CAGCU-GCucGCA-CUGCAGCUauAGCU- -5'
16292 3' -51.4 NC_004084.1 + 31386 0.69 0.786599
Target:  5'- cUCGACgGGGCGgacuACGcCGAUAUCGGc -3'
miRNA:   3'- cAGCUG-CUCGCac--UGCaGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 32418 0.68 0.833145
Target:  5'- cGUCGACGAGCucgcacucGUcgcgaacGAgGUCGAgGUCGAu -3'
miRNA:   3'- -CAGCUGCUCG--------CA-------CUgCAGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 34851 0.66 0.93542
Target:  5'- cUCGACGAcaGCGggGAgCG-CGAUAUCGu -3'
miRNA:   3'- cAGCUGCU--CGCa-CU-GCaGCUAUAGCu -5'
16292 3' -51.4 NC_004084.1 + 35836 0.7 0.745642
Target:  5'- cGUCGGCGA-CGUcGugGUagcUGAUAUCGAc -3'
miRNA:   3'- -CAGCUGCUcGCA-CugCA---GCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 35967 0.66 0.929943
Target:  5'- cGUCG-CGAGCGcccccgaaGACGgCGGUAUUGGc -3'
miRNA:   3'- -CAGCuGCUCGCa-------CUGCaGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 36814 0.72 0.614505
Target:  5'- cUCGACGAGCGUcGACGaaCGccgAUCGAa -3'
miRNA:   3'- cAGCUGCUCGCA-CUGCa-GCua-UAGCU- -5'
16292 3' -51.4 NC_004084.1 + 37162 0.66 0.929943
Target:  5'- -gCGACGAGCucggGGCGuUCGAcaucAUCGAg -3'
miRNA:   3'- caGCUGCUCGca--CUGC-AGCUa---UAGCU- -5'
16292 3' -51.4 NC_004084.1 + 38309 1.09 0.003086
Target:  5'- cGUCGACGAGCGUGACGUCGAUAUCGAc -3'
miRNA:   3'- -CAGCUGCUCGCACUGCAGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 38434 0.68 0.851583
Target:  5'- cUCGAgCGAacGCGcGACGUCGAcGUCGu -3'
miRNA:   3'- cAGCU-GCU--CGCaCUGCAGCUaUAGCu -5'
16292 3' -51.4 NC_004084.1 + 40880 0.72 0.614505
Target:  5'- cGUCGACGcuCGUGACGccuucaacaUCGAUAUCcGAc -3'
miRNA:   3'- -CAGCUGCucGCACUGC---------AGCUAUAG-CU- -5'
16292 3' -51.4 NC_004084.1 + 41386 0.75 0.485068
Target:  5'- aUCGACGGGCGcaGACGcUCGGUcgCGGa -3'
miRNA:   3'- cAGCUGCUCGCa-CUGC-AGCUAuaGCU- -5'
16292 3' -51.4 NC_004084.1 + 41785 0.67 0.891207
Target:  5'- cGUCGACGA-CGagGGCGUCacgAUCGAc -3'
miRNA:   3'- -CAGCUGCUcGCa-CUGCAGcuaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 42026 0.69 0.806143
Target:  5'- cGUCG-CGAGCGaGGCGgUCGAcAUCGu -3'
miRNA:   3'- -CAGCuGCUCGCaCUGC-AGCUaUAGCu -5'
16292 3' -51.4 NC_004084.1 + 44949 0.66 0.924184
Target:  5'- cGUCGACGAGaacGGCGUUcGUcgCGAg -3'
miRNA:   3'- -CAGCUGCUCgcaCUGCAGcUAuaGCU- -5'
16292 3' -51.4 NC_004084.1 + 45423 0.71 0.713655
Target:  5'- cGUCGAuCGAGcCG-GAUGUCGGUG-CGAc -3'
miRNA:   3'- -CAGCU-GCUC-GCaCUGCAGCUAUaGCU- -5'
16292 3' -51.4 NC_004084.1 + 45668 0.69 0.806143
Target:  5'- -aCGACGAGaCGgucGGCGUCGAcgagAUCGu -3'
miRNA:   3'- caGCUGCUC-GCa--CUGCAGCUa---UAGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.