Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16292 | 3' | -51.4 | NC_004084.1 | + | 56116 | 0.68 | 0.860006 |
Target: 5'- cGUCGACGucguGCGccgcagUGuCGUCGGcGUCGAc -3' miRNA: 3'- -CAGCUGCu---CGC------ACuGCAGCUaUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 55347 | 0.73 | 0.570389 |
Target: 5'- cGUCGACGAGCGgccCGUCGA---CGAg -3' miRNA: 3'- -CAGCUGCUCGCacuGCAGCUauaGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 55270 | 0.68 | 0.834045 |
Target: 5'- gGUCGGCG-GCGUGuagauCGUCagcugcGUAUCGAu -3' miRNA: 3'- -CAGCUGCuCGCACu----GCAGc-----UAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 49866 | 0.66 | 0.911824 |
Target: 5'- uGUCGGacucGGUGagGACGUCGAUcUCGAg -3' miRNA: 3'- -CAGCUgc--UCGCa-CUGCAGCUAuAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 48036 | 0.69 | 0.806143 |
Target: 5'- -aCGACGAGCucGACGUCGAacUCa- -3' miRNA: 3'- caGCUGCUCGcaCUGCAGCUauAGcu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 47774 | 0.71 | 0.724415 |
Target: 5'- aUCGACGccGCGuUGAUGUCGGUGagGAg -3' miRNA: 3'- cAGCUGCu-CGC-ACUGCAGCUAUagCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 46287 | 0.67 | 0.876118 |
Target: 5'- cGUCGACgGAGuCGUaGuCGUCGAcGUUGAc -3' miRNA: 3'- -CAGCUG-CUC-GCA-CuGCAGCUaUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 45668 | 0.69 | 0.806143 |
Target: 5'- -aCGACGAGaCGgucGGCGUCGAcgagAUCGu -3' miRNA: 3'- caGCUGCUC-GCa--CUGCAGCUa---UAGCu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 45423 | 0.71 | 0.713655 |
Target: 5'- cGUCGAuCGAGcCG-GAUGUCGGUG-CGAc -3' miRNA: 3'- -CAGCU-GCUC-GCaCUGCAGCUAUaGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 44949 | 0.66 | 0.924184 |
Target: 5'- cGUCGACGAGaacGGCGUUcGUcgCGAg -3' miRNA: 3'- -CAGCUGCUCgcaCUGCAGcUAuaGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 42026 | 0.69 | 0.806143 |
Target: 5'- cGUCG-CGAGCGaGGCGgUCGAcAUCGu -3' miRNA: 3'- -CAGCuGCUCGCaCUGC-AGCUaUAGCu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 41785 | 0.67 | 0.891207 |
Target: 5'- cGUCGACGA-CGagGGCGUCacgAUCGAc -3' miRNA: 3'- -CAGCUGCUcGCa-CUGCAGcuaUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 41386 | 0.75 | 0.485068 |
Target: 5'- aUCGACGGGCGcaGACGcUCGGUcgCGGa -3' miRNA: 3'- cAGCUGCUCGCa-CUGC-AGCUAuaGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 40880 | 0.72 | 0.614505 |
Target: 5'- cGUCGACGcuCGUGACGccuucaacaUCGAUAUCcGAc -3' miRNA: 3'- -CAGCUGCucGCACUGC---------AGCUAUAG-CU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 38434 | 0.68 | 0.851583 |
Target: 5'- cUCGAgCGAacGCGcGACGUCGAcGUCGu -3' miRNA: 3'- cAGCU-GCU--CGCaCUGCAGCUaUAGCu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 38309 | 1.09 | 0.003086 |
Target: 5'- cGUCGACGAGCGUGACGUCGAUAUCGAc -3' miRNA: 3'- -CAGCUGCUCGCACUGCAGCUAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 37162 | 0.66 | 0.929943 |
Target: 5'- -gCGACGAGCucggGGCGuUCGAcaucAUCGAg -3' miRNA: 3'- caGCUGCUCGca--CUGC-AGCUa---UAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 36814 | 0.72 | 0.614505 |
Target: 5'- cUCGACGAGCGUcGACGaaCGccgAUCGAa -3' miRNA: 3'- cAGCUGCUCGCA-CUGCa-GCua-UAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 35967 | 0.66 | 0.929943 |
Target: 5'- cGUCG-CGAGCGcccccgaaGACGgCGGUAUUGGc -3' miRNA: 3'- -CAGCuGCUCGCa-------CUGCaGCUAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 35836 | 0.7 | 0.745642 |
Target: 5'- cGUCGGCGA-CGUcGugGUagcUGAUAUCGAc -3' miRNA: 3'- -CAGCUGCUcGCA-CugCA---GCUAUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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