Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16292 | 3' | -51.4 | NC_004084.1 | + | 34851 | 0.66 | 0.93542 |
Target: 5'- cUCGACGAcaGCGggGAgCG-CGAUAUCGu -3' miRNA: 3'- cAGCUGCU--CGCa-CU-GCaGCUAUAGCu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 32418 | 0.68 | 0.833145 |
Target: 5'- cGUCGACGAGCucgcacucGUcgcgaacGAgGUCGAgGUCGAu -3' miRNA: 3'- -CAGCUGCUCG--------CA-------CUgCAGCUaUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 31386 | 0.69 | 0.786599 |
Target: 5'- cUCGACgGGGCGgacuACGcCGAUAUCGGc -3' miRNA: 3'- cAGCUG-CUCGCac--UGCaGCUAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 30930 | 0.7 | 0.756086 |
Target: 5'- cGUCGAuCGcuCGUcGACGUCGAgcUCGAg -3' miRNA: 3'- -CAGCU-GCucGCA-CUGCAGCUauAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 30417 | 0.77 | 0.361356 |
Target: 5'- cGUCGACGGGCGgcGACGgaagCGAUggCGAg -3' miRNA: 3'- -CAGCUGCUCGCa-CUGCa---GCUAuaGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 30342 | 0.67 | 0.876118 |
Target: 5'- cGUCGGCGAG-GUGGcCGaCGGcGUCGGa -3' miRNA: 3'- -CAGCUGCUCgCACU-GCaGCUaUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 28120 | 0.71 | 0.724415 |
Target: 5'- cUCGACGAGCGcgucaaUGACGUCcucGUcUCGAu -3' miRNA: 3'- cAGCUGCUCGC------ACUGCAGc--UAuAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 21173 | 0.67 | 0.898352 |
Target: 5'- cUCGACGAGCGccggGACG-CGGUucuUCu- -3' miRNA: 3'- cAGCUGCUCGCa---CUGCaGCUAu--AGcu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 20065 | 0.67 | 0.896945 |
Target: 5'- uGUCGAUaccgacgacgccgGAGCGaaccgGAagacgacCGUCGAUAUCGAc -3' miRNA: 3'- -CAGCUG-------------CUCGCa----CU-------GCAGCUAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 18156 | 0.66 | 0.918144 |
Target: 5'- -cCGGCGAGUG-GACGaUgGAgAUCGAg -3' miRNA: 3'- caGCUGCUCGCaCUGC-AgCUaUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 18024 | 0.71 | 0.669917 |
Target: 5'- -aCGGCGAGUGUGAUGUgGuccgagaccAUGUCGGc -3' miRNA: 3'- caGCUGCUCGCACUGCAgC---------UAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 16943 | 0.81 | 0.235481 |
Target: 5'- aUCGGCGGGCGUcgcGACGUCGGgucuUCGAg -3' miRNA: 3'- cAGCUGCUCGCA---CUGCAGCUau--AGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 16756 | 0.67 | 0.904551 |
Target: 5'- cUCGAUGAcguuguucgcccgGCGUuugaacucGACGUCGAUGUCc- -3' miRNA: 3'- cAGCUGCU-------------CGCA--------CUGCAGCUAUAGcu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 14648 | 0.66 | 0.929943 |
Target: 5'- -cCGGCGAGCGcccaGUCGAUGcccgCGAg -3' miRNA: 3'- caGCUGCUCGCacugCAGCUAUa---GCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 14080 | 0.7 | 0.776576 |
Target: 5'- -gCGAcCGA-CGUaGACGUCGAUGUCGu -3' miRNA: 3'- caGCU-GCUcGCA-CUGCAGCUAUAGCu -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 12147 | 0.68 | 0.860006 |
Target: 5'- cGUCGACGaAGCGaugGAUGUCGcacaCGAg -3' miRNA: 3'- -CAGCUGC-UCGCa--CUGCAGCuauaGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 11836 | 0.68 | 0.860006 |
Target: 5'- gGUCGAaucGCcUGACGgCGAUAUCGAg -3' miRNA: 3'- -CAGCUgcuCGcACUGCaGCUAUAGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 8585 | 0.67 | 0.883794 |
Target: 5'- cGUCGACGAGUGauucgaUGAacuCGUCGAggcuguccUCGAg -3' miRNA: 3'- -CAGCUGCUCGC------ACU---GCAGCUau------AGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 7171 | 0.67 | 0.891207 |
Target: 5'- gGUCGGuCGcAGCGauccgGACGUCGAgcugcUCGAc -3' miRNA: 3'- -CAGCU-GC-UCGCa----CUGCAGCUau---AGCU- -5' |
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16292 | 3' | -51.4 | NC_004084.1 | + | 6915 | 0.67 | 0.905226 |
Target: 5'- cUCGACGAGCucccacucuugGUGAaggaGUCGAUGgaacCGGu -3' miRNA: 3'- cAGCUGCUCG-----------CACUg---CAGCUAUa---GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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