Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 16292 | 3' | -51.4 | NC_004084.1 | + | 6120 | 0.69 | 0.815643 |
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Target: 5'- -aCGAUGAGC-UGugGUCGuucGUCGGu -3' miRNA: 3'- caGCUGCUCGcACugCAGCua-UAGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 5504 | 0.7 | 0.756086 |
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Target: 5'- aGUCGACGAGUcguuccuaguggGUGGCGagGAacUCGAc -3' miRNA: 3'- -CAGCUGCUCG------------CACUGCagCUauAGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 5342 | 0.67 | 0.876898 |
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Target: 5'- cGUCGcCGAGCGggcggcgaggacuggGACGaucUCGAcGUCGAa -3' miRNA: 3'- -CAGCuGCUCGCa--------------CUGC---AGCUaUAGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 4234 | 0.67 | 0.891207 |
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Target: 5'- aUCGACGAG-GaGGCGUCGuuccUCGAg -3' miRNA: 3'- cAGCUGCUCgCaCUGCAGCuau-AGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 2021 | 0.74 | 0.548604 |
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Target: 5'- aUCGGgagcCGAGCGUcuccgaGAgGUCGAUGUCGAu -3' miRNA: 3'- cAGCU----GCUCGCA------CUgCAGCUAUAGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 1728 | 0.71 | 0.691903 |
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Target: 5'- -gCGAguCGAGCGUGGCGUaGAUGaCGAa -3' miRNA: 3'- caGCU--GCUCGCACUGCAgCUAUaGCU- -5' |
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| 16292 | 3' | -51.4 | NC_004084.1 | + | 661 | 0.67 | 0.898352 |
|
Target: 5'- cGUCGugGuaGGUGUgGAUGUCGGcuucGUCGAc -3' miRNA: 3'- -CAGCugC--UCGCA-CUGCAGCUa---UAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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