miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16292 3' -51.4 NC_004084.1 + 30417 0.77 0.361356
Target:  5'- cGUCGACGGGCGgcGACGgaagCGAUggCGAg -3'
miRNA:   3'- -CAGCUGCUCGCa-CUGCa---GCUAuaGCU- -5'
16292 3' -51.4 NC_004084.1 + 5342 0.67 0.876898
Target:  5'- cGUCGcCGAGCGggcggcgaggacuggGACGaucUCGAcGUCGAa -3'
miRNA:   3'- -CAGCuGCUCGCa--------------CUGC---AGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 41785 0.67 0.891207
Target:  5'- cGUCGACGA-CGagGGCGUCacgAUCGAc -3'
miRNA:   3'- -CAGCUGCUcGCa-CUGCAGcuaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 4234 0.67 0.891207
Target:  5'- aUCGACGAG-GaGGCGUCGuuccUCGAg -3'
miRNA:   3'- cAGCUGCUCgCaCUGCAGCuau-AGCU- -5'
16292 3' -51.4 NC_004084.1 + 20065 0.67 0.896945
Target:  5'- uGUCGAUaccgacgacgccgGAGCGaaccgGAagacgacCGUCGAUAUCGAc -3'
miRNA:   3'- -CAGCUG-------------CUCGCa----CU-------GCAGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 18156 0.66 0.918144
Target:  5'- -cCGGCGAGUG-GACGaUgGAgAUCGAg -3'
miRNA:   3'- caGCUGCUCGCaCUGC-AgCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 44949 0.66 0.924184
Target:  5'- cGUCGACGAGaacGGCGUUcGUcgCGAg -3'
miRNA:   3'- -CAGCUGCUCgcaCUGCAGcUAuaGCU- -5'
16292 3' -51.4 NC_004084.1 + 37162 0.66 0.929943
Target:  5'- -gCGACGAGCucggGGCGuUCGAcaucAUCGAg -3'
miRNA:   3'- caGCUGCUCGca--CUGC-AGCUa---UAGCU- -5'
16292 3' -51.4 NC_004084.1 + 35967 0.66 0.929943
Target:  5'- cGUCG-CGAGCGcccccgaaGACGgCGGUAUUGGc -3'
miRNA:   3'- -CAGCuGCUCGCa-------CUGCaGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 12147 0.68 0.860006
Target:  5'- cGUCGACGaAGCGaugGAUGUCGcacaCGAg -3'
miRNA:   3'- -CAGCUGC-UCGCa--CUGCAGCuauaGCU- -5'
16292 3' -51.4 NC_004084.1 + 11836 0.68 0.860006
Target:  5'- gGUCGAaucGCcUGACGgCGAUAUCGAg -3'
miRNA:   3'- -CAGCUgcuCGcACUGCaGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 36814 0.72 0.614505
Target:  5'- cUCGACGAGCGUcGACGaaCGccgAUCGAa -3'
miRNA:   3'- cAGCUGCUCGCA-CUGCa-GCua-UAGCU- -5'
16292 3' -51.4 NC_004084.1 + 28120 0.71 0.724415
Target:  5'- cUCGACGAGCGcgucaaUGACGUCcucGUcUCGAu -3'
miRNA:   3'- cAGCUGCUCGC------ACUGCAGc--UAuAGCU- -5'
16292 3' -51.4 NC_004084.1 + 5504 0.7 0.756086
Target:  5'- aGUCGACGAGUcguuccuaguggGUGGCGagGAacUCGAc -3'
miRNA:   3'- -CAGCUGCUCG------------CACUGCagCUauAGCU- -5'
16292 3' -51.4 NC_004084.1 + 45668 0.69 0.806143
Target:  5'- -aCGACGAGaCGgucGGCGUCGAcgagAUCGu -3'
miRNA:   3'- caGCUGCUC-GCa--CUGCAGCUa---UAGCu -5'
16292 3' -51.4 NC_004084.1 + 48036 0.69 0.806143
Target:  5'- -aCGACGAGCucGACGUCGAacUCa- -3'
miRNA:   3'- caGCUGCUCGcaCUGCAGCUauAGcu -5'
16292 3' -51.4 NC_004084.1 + 6120 0.69 0.815643
Target:  5'- -aCGAUGAGC-UGugGUCGuucGUCGGu -3'
miRNA:   3'- caGCUGCUCGcACugCAGCua-UAGCU- -5'
16292 3' -51.4 NC_004084.1 + 32418 0.68 0.833145
Target:  5'- cGUCGACGAGCucgcacucGUcgcgaacGAgGUCGAgGUCGAu -3'
miRNA:   3'- -CAGCUGCUCG--------CA-------CUgCAGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 38434 0.68 0.851583
Target:  5'- cUCGAgCGAacGCGcGACGUCGAcGUCGu -3'
miRNA:   3'- cAGCU-GCU--CGCaCUGCAGCUaUAGCu -5'
16292 3' -51.4 NC_004084.1 + 38309 1.09 0.003086
Target:  5'- cGUCGACGAGCGUGACGUCGAUAUCGAc -3'
miRNA:   3'- -CAGCUGCUCGCACUGCAGCUAUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.