miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16292 3' -51.4 NC_004084.1 + 42026 0.69 0.806143
Target:  5'- cGUCG-CGAGCGaGGCGgUCGAcAUCGu -3'
miRNA:   3'- -CAGCuGCUCGCaCUGC-AGCUaUAGCu -5'
16292 3' -51.4 NC_004084.1 + 31386 0.69 0.786599
Target:  5'- cUCGACgGGGCGgacuACGcCGAUAUCGGc -3'
miRNA:   3'- cAGCUG-CUCGCac--UGCaGCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 14080 0.7 0.776576
Target:  5'- -gCGAcCGA-CGUaGACGUCGAUGUCGu -3'
miRNA:   3'- caGCU-GCUcGCA-CUGCAGCUAUAGCu -5'
16292 3' -51.4 NC_004084.1 + 30930 0.7 0.756086
Target:  5'- cGUCGAuCGcuCGUcGACGUCGAgcUCGAg -3'
miRNA:   3'- -CAGCU-GCucGCA-CUGCAGCUauAGCU- -5'
16292 3' -51.4 NC_004084.1 + 35836 0.7 0.745642
Target:  5'- cGUCGGCGA-CGUcGugGUagcUGAUAUCGAc -3'
miRNA:   3'- -CAGCUGCUcGCA-CugCA---GCUAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 47774 0.71 0.724415
Target:  5'- aUCGACGccGCGuUGAUGUCGGUGagGAg -3'
miRNA:   3'- cAGCUGCu-CGC-ACUGCAGCUAUagCU- -5'
16292 3' -51.4 NC_004084.1 + 45423 0.71 0.713655
Target:  5'- cGUCGAuCGAGcCG-GAUGUCGGUG-CGAc -3'
miRNA:   3'- -CAGCU-GCUC-GCaCUGCAGCUAUaGCU- -5'
16292 3' -51.4 NC_004084.1 + 1728 0.71 0.691903
Target:  5'- -gCGAguCGAGCGUGGCGUaGAUGaCGAa -3'
miRNA:   3'- caGCU--GCUCGCACUGCAgCUAUaGCU- -5'
16292 3' -51.4 NC_004084.1 + 18024 0.71 0.669917
Target:  5'- -aCGGCGAGUGUGAUGUgGuccgagaccAUGUCGGc -3'
miRNA:   3'- caGCUGCUCGCACUGCAgC---------UAUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 56116 0.68 0.860006
Target:  5'- cGUCGACGucguGCGccgcagUGuCGUCGGcGUCGAc -3'
miRNA:   3'- -CAGCUGCu---CGC------ACuGCAGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 30342 0.67 0.876118
Target:  5'- cGUCGGCGAG-GUGGcCGaCGGcGUCGGa -3'
miRNA:   3'- -CAGCUGCUCgCACU-GCaGCUaUAGCU- -5'
16292 3' -51.4 NC_004084.1 + 14648 0.66 0.929943
Target:  5'- -cCGGCGAGCGcccaGUCGAUGcccgCGAg -3'
miRNA:   3'- caGCUGCUCGCacugCAGCUAUa---GCU- -5'
16292 3' -51.4 NC_004084.1 + 49866 0.66 0.911824
Target:  5'- uGUCGGacucGGUGagGACGUCGAUcUCGAg -3'
miRNA:   3'- -CAGCUgc--UCGCa-CUGCAGCUAuAGCU- -5'
16292 3' -51.4 NC_004084.1 + 6915 0.67 0.905226
Target:  5'- cUCGACGAGCucccacucuugGUGAaggaGUCGAUGgaacCGGu -3'
miRNA:   3'- cAGCUGCUCG-----------CACUg---CAGCUAUa---GCU- -5'
16292 3' -51.4 NC_004084.1 + 16756 0.67 0.904551
Target:  5'- cUCGAUGAcguuguucgcccgGCGUuugaacucGACGUCGAUGUCc- -3'
miRNA:   3'- cAGCUGCU-------------CGCA--------CUGCAGCUAUAGcu -5'
16292 3' -51.4 NC_004084.1 + 661 0.67 0.898352
Target:  5'- cGUCGugGuaGGUGUgGAUGUCGGcuucGUCGAc -3'
miRNA:   3'- -CAGCugC--UCGCA-CUGCAGCUa---UAGCU- -5'
16292 3' -51.4 NC_004084.1 + 21173 0.67 0.898352
Target:  5'- cUCGACGAGCGccggGACG-CGGUucuUCu- -3'
miRNA:   3'- cAGCUGCUCGCa---CUGCaGCUAu--AGcu -5'
16292 3' -51.4 NC_004084.1 + 7171 0.67 0.891207
Target:  5'- gGUCGGuCGcAGCGauccgGACGUCGAgcugcUCGAc -3'
miRNA:   3'- -CAGCU-GC-UCGCa----CUGCAGCUau---AGCU- -5'
16292 3' -51.4 NC_004084.1 + 8585 0.67 0.883794
Target:  5'- cGUCGACGAGUGauucgaUGAacuCGUCGAggcuguccUCGAg -3'
miRNA:   3'- -CAGCUGCUCGC------ACU---GCAGCUau------AGCU- -5'
16292 3' -51.4 NC_004084.1 + 46287 0.67 0.876118
Target:  5'- cGUCGACgGAGuCGUaGuCGUCGAcGUUGAc -3'
miRNA:   3'- -CAGCUG-CUC-GCA-CuGCAGCUaUAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.