miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16292 5' -55.4 NC_004084.1 + 13241 0.66 0.763218
Target:  5'- -aUCGUUgCCGuacucacCGUCGUCGGgAUCGAu -3'
miRNA:   3'- caAGCGA-GGCc------GCAGCAGCCaUAGCU- -5'
16292 5' -55.4 NC_004084.1 + 39403 0.66 0.75311
Target:  5'- aGUUCGagcUCGGCGUCGUCGuccucacUCGAu -3'
miRNA:   3'- -CAAGCga-GGCCGCAGCAGCcau----AGCU- -5'
16292 5' -55.4 NC_004084.1 + 15015 0.66 0.742884
Target:  5'- --gCGCUgCGGC-UCGUCGaGcGUCGAc -3'
miRNA:   3'- caaGCGAgGCCGcAGCAGC-CaUAGCU- -5'
16292 5' -55.4 NC_004084.1 + 26244 0.66 0.732549
Target:  5'- cGUUCGC-CagGGCGUCcUCGGcGUUGAu -3'
miRNA:   3'- -CAAGCGaGg-CCGCAGcAGCCaUAGCU- -5'
16292 5' -55.4 NC_004084.1 + 648 0.66 0.732549
Target:  5'- ---aGCUCCucgacGGCGUCGUgguaGGUGUgGAu -3'
miRNA:   3'- caagCGAGG-----CCGCAGCAg---CCAUAgCU- -5'
16292 5' -55.4 NC_004084.1 + 16767 0.66 0.722116
Target:  5'- uGUUCGC-CCGGCGUuugaacucgaCGUCGaUGUCc- -3'
miRNA:   3'- -CAAGCGaGGCCGCA----------GCAGCcAUAGcu -5'
16292 5' -55.4 NC_004084.1 + 51141 0.66 0.722116
Target:  5'- -cUUGCUCaUGGUGaUC-UCGGUGUCGGu -3'
miRNA:   3'- caAGCGAG-GCCGC-AGcAGCCAUAGCU- -5'
16292 5' -55.4 NC_004084.1 + 17431 0.67 0.715814
Target:  5'- -cUCGUUCCGGaacUCGUCGGguucguccgggaucGUCGAc -3'
miRNA:   3'- caAGCGAGGCCgc-AGCAGCCa-------------UAGCU- -5'
16292 5' -55.4 NC_004084.1 + 21893 0.67 0.711597
Target:  5'- -gUCGCgaUCGGCGUC-UCGGUcggccuccucAUCGAg -3'
miRNA:   3'- caAGCGa-GGCCGCAGcAGCCA----------UAGCU- -5'
16292 5' -55.4 NC_004084.1 + 17502 0.67 0.690342
Target:  5'- -aUCGUguuugaCGGCaucccGUCGUCGGaUAUCGAu -3'
miRNA:   3'- caAGCGag----GCCG-----CAGCAGCC-AUAGCU- -5'
16292 5' -55.4 NC_004084.1 + 35939 0.67 0.679628
Target:  5'- --aUGUccCCGGCGUCGcCGGgGUCGGc -3'
miRNA:   3'- caaGCGa-GGCCGCAGCaGCCaUAGCU- -5'
16292 5' -55.4 NC_004084.1 + 45467 0.68 0.658079
Target:  5'- aGUUC-UUCUGGCGuaUCGUCGGUcaCGAa -3'
miRNA:   3'- -CAAGcGAGGCCGC--AGCAGCCAuaGCU- -5'
16292 5' -55.4 NC_004084.1 + 34710 0.68 0.647265
Target:  5'- -gUCGUccuuUCCgGGCGUCGcCGGUucgCGAu -3'
miRNA:   3'- caAGCG----AGG-CCGCAGCaGCCAua-GCU- -5'
16292 5' -55.4 NC_004084.1 + 37037 0.68 0.636437
Target:  5'- -aUCGCcgccUCaCGGuCGUCGaugucgauguucUCGGUGUCGAg -3'
miRNA:   3'- caAGCG----AG-GCC-GCAGC------------AGCCAUAGCU- -5'
16292 5' -55.4 NC_004084.1 + 21070 0.68 0.625606
Target:  5'- --gUGCUUCgagcugGGCGUCGUCGGgAUCGc -3'
miRNA:   3'- caaGCGAGG------CCGCAGCAGCCaUAGCu -5'
16292 5' -55.4 NC_004084.1 + 16672 0.68 0.603968
Target:  5'- -cUCGUcgCCGGCGUCGUCccgAUCGu -3'
miRNA:   3'- caAGCGa-GGCCGCAGCAGccaUAGCu -5'
16292 5' -55.4 NC_004084.1 + 51752 0.69 0.56104
Target:  5'- ---aGCUUCguGGCGUCGUCGGgcucuucGUCGGg -3'
miRNA:   3'- caagCGAGG--CCGCAGCAGCCa------UAGCU- -5'
16292 5' -55.4 NC_004084.1 + 28883 0.7 0.539876
Target:  5'- --aCGCUCCGGCG-CGUcacCGGccgcgcgAUCGAg -3'
miRNA:   3'- caaGCGAGGCCGCaGCA---GCCa------UAGCU- -5'
16292 5' -55.4 NC_004084.1 + 35992 0.7 0.51899
Target:  5'- -cUCGuCUCCGaccGCGUCGUCGGagcCGAg -3'
miRNA:   3'- caAGC-GAGGC---CGCAGCAGCCauaGCU- -5'
16292 5' -55.4 NC_004084.1 + 54577 0.71 0.458464
Target:  5'- ---gGUUCCGGUggagccGUCGUCGGcGUCGAc -3'
miRNA:   3'- caagCGAGGCCG------CAGCAGCCaUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.