miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16293 5' -50.6 NC_004084.1 + 58157 0.66 0.919042
Target:  5'- cCCAGCUGcacgcUCGAGCuaCUCuCCGa -3'
miRNA:   3'- -GGUCGACaaau-AGUUCGcgGAGuGGU- -5'
16293 5' -50.6 NC_004084.1 + 42350 0.66 0.912583
Target:  5'- gCGGCggaac-UCGAGCGCCagGCCGa -3'
miRNA:   3'- gGUCGacaaauAGUUCGCGGagUGGU- -5'
16293 5' -50.6 NC_004084.1 + 41642 0.67 0.891449
Target:  5'- gCGGCgaacgGUgcGagGAGCGCCaUCACCGg -3'
miRNA:   3'- gGUCGa----CAaaUagUUCGCGG-AGUGGU- -5'
16293 5' -50.6 NC_004084.1 + 47365 0.67 0.883832
Target:  5'- uCCGGCUGgu--UCu-GCGUCUC-CCAg -3'
miRNA:   3'- -GGUCGACaaauAGuuCGCGGAGuGGU- -5'
16293 5' -50.6 NC_004084.1 + 22132 0.68 0.823177
Target:  5'- cCCGGCUGggaagcgAUgacugaccgCGAGCGCCUCGgCGc -3'
miRNA:   3'- -GGUCGACaaa----UA---------GUUCGCGGAGUgGU- -5'
16293 5' -50.6 NC_004084.1 + 36589 0.69 0.803756
Target:  5'- cCCuGCauc--GUCcAGCGCCUCACCGu -3'
miRNA:   3'- -GGuCGacaaaUAGuUCGCGGAGUGGU- -5'
16293 5' -50.6 NC_004084.1 + 3638 0.69 0.783563
Target:  5'- aUCGGCUGgcucacgAUCGAGauCCUCACCc -3'
miRNA:   3'- -GGUCGACaaa----UAGUUCgcGGAGUGGu -5'
16293 5' -50.6 NC_004084.1 + 57808 0.7 0.718225
Target:  5'- gCCAGCUucaacgAUCAacucgagGGCGuCCUCACCGa -3'
miRNA:   3'- -GGUCGAcaaa--UAGU-------UCGC-GGAGUGGU- -5'
16293 5' -50.6 NC_004084.1 + 50090 0.73 0.572149
Target:  5'- gCCGGCUGg--AUCAuccGCGCCgaCGCCGu -3'
miRNA:   3'- -GGUCGACaaaUAGUu--CGCGGa-GUGGU- -5'
16293 5' -50.6 NC_004084.1 + 15194 0.75 0.484403
Target:  5'- uCCAGCUGgac-UCGcaccaggagaucGGCGUCUCACCGg -3'
miRNA:   3'- -GGUCGACaaauAGU------------UCGCGGAGUGGU- -5'
16293 5' -50.6 NC_004084.1 + 22166 0.77 0.37559
Target:  5'- cCCAGCUGgcggagggAUCGcAGCGCC-CACCGg -3'
miRNA:   3'- -GGUCGACaaa-----UAGU-UCGCGGaGUGGU- -5'
16293 5' -50.6 NC_004084.1 + 38011 1.12 0.002004
Target:  5'- gCCAGCUGUUUAUCAAGCGCCUCACCAg -3'
miRNA:   3'- -GGUCGACAAAUAGUUCGCGGAGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.