miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16295 3' -53.7 NC_004084.1 + 3441 0.66 0.85999
Target:  5'- cGCGGU-ACGUCGCGGggUUCGgaaUCaACa -3'
miRNA:   3'- -CGCUAcUGCAGCGCCuaGAGC---AGcUG- -5'
16295 3' -53.7 NC_004084.1 + 24044 0.66 0.85999
Target:  5'- aGCGG-GAC-UCGaCGGAUCUCcuuUCGAUa -3'
miRNA:   3'- -CGCUaCUGcAGC-GCCUAGAGc--AGCUG- -5'
16295 3' -53.7 NC_004084.1 + 31413 0.66 0.857533
Target:  5'- gGCGAagucgcaGACGaCGCGGccgcgauggaucugGUCUCuGUCGACc -3'
miRNA:   3'- -CGCUa------CUGCaGCGCC--------------UAGAG-CAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 8557 0.66 0.851718
Target:  5'- cGCag-GAC-UCGcCGGAUCUCGcucgCGACg -3'
miRNA:   3'- -CGcuaCUGcAGC-GCCUAGAGCa---GCUG- -5'
16295 3' -53.7 NC_004084.1 + 48656 0.66 0.851718
Target:  5'- cCGAUGAUGgaaGCGGG-CUCauUCGACa -3'
miRNA:   3'- cGCUACUGCag-CGCCUaGAGc-AGCUG- -5'
16295 3' -53.7 NC_004084.1 + 2 0.66 0.84322
Target:  5'- uUGGUGA-GUCGgGGGUCUUcgaaGUCGAg -3'
miRNA:   3'- cGCUACUgCAGCgCCUAGAG----CAGCUg -5'
16295 3' -53.7 NC_004084.1 + 31267 0.66 0.842358
Target:  5'- cGCGGucgagcucgaacgUGGCcgGUCGCGGGUCccuaUCGUUGGg -3'
miRNA:   3'- -CGCU-------------ACUG--CAGCGCCUAG----AGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 2567 0.66 0.834505
Target:  5'- cGCGAaGACGUcCGCG----UCGUUGACg -3'
miRNA:   3'- -CGCUaCUGCA-GCGCcuagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 49342 0.66 0.834505
Target:  5'- gGCGAUcgUGUCGaGGugaUCGUCGACg -3'
miRNA:   3'- -CGCUAcuGCAGCgCCuagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 57650 0.66 0.825581
Target:  5'- aCGAUGAauCGUgGaCGGAcUUCGUCGAa -3'
miRNA:   3'- cGCUACU--GCAgC-GCCUaGAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 658 0.66 0.825581
Target:  5'- ----cGGCGUCGUGGuagguguggauGUCggcuUCGUCGACg -3'
miRNA:   3'- cgcuaCUGCAGCGCC-----------UAG----AGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 8182 0.67 0.816457
Target:  5'- aGCGAcgccucagagUGGgGuUCGCGGAUggCGUCGAg -3'
miRNA:   3'- -CGCU----------ACUgC-AGCGCCUAgaGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 5238 0.67 0.807143
Target:  5'- cGCGAcgGACGaacaCGCugGGGUCagucaucggccUCGUCGACg -3'
miRNA:   3'- -CGCUa-CUGCa---GCG--CCUAG-----------AGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 53131 0.67 0.807143
Target:  5'- -gGAUGGCGgaccauccgcUGCGGGaCgUCGUCGACg -3'
miRNA:   3'- cgCUACUGCa---------GCGCCUaG-AGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 56432 0.67 0.807143
Target:  5'- aGCGGcacCGUCGCGaacgacGAUCUCGaCGGCg -3'
miRNA:   3'- -CGCUacuGCAGCGC------CUAGAGCaGCUG- -5'
16295 3' -53.7 NC_004084.1 + 49295 0.67 0.807143
Target:  5'- gGCGuuccgGAUGUacacugaGCGuGAgCUCGUCGACa -3'
miRNA:   3'- -CGCua---CUGCAg------CGC-CUaGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 14580 0.67 0.79765
Target:  5'- ----cGGCGUCGCGGAugUCUCG-CGcCc -3'
miRNA:   3'- cgcuaCUGCAGCGCCU--AGAGCaGCuG- -5'
16295 3' -53.7 NC_004084.1 + 21924 0.67 0.79765
Target:  5'- uCGAguucGACGUCGaGGAaaUUGUCGGCg -3'
miRNA:   3'- cGCUa---CUGCAGCgCCUagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 58040 0.67 0.79765
Target:  5'- gGCGgcGACGUCccCGGG-CUCG-CGGCa -3'
miRNA:   3'- -CGCuaCUGCAGc-GCCUaGAGCaGCUG- -5'
16295 3' -53.7 NC_004084.1 + 26281 0.67 0.79765
Target:  5'- aUGGUGcCGcUCGCGaGGUCU-GUCGACc -3'
miRNA:   3'- cGCUACuGC-AGCGC-CUAGAgCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.