miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16295 3' -53.7 NC_004084.1 + 53708 0.7 0.608305
Target:  5'- uUGGUaGCuGUCGauGAUCUCGUCGGCu -3'
miRNA:   3'- cGCUAcUG-CAGCgcCUAGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 36139 0.7 0.607217
Target:  5'- cGCGAgguGCGUUGCcucgacuGGAUCgaCGUCGACg -3'
miRNA:   3'- -CGCUac-UGCAGCG-------CCUAGa-GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 52590 0.7 0.630091
Target:  5'- gGCGgcGugGUCcgGUGGGUCgaggcaGUCGACa -3'
miRNA:   3'- -CGCuaCugCAG--CGCCUAGag----CAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 51326 0.7 0.619193
Target:  5'- gGCGAUcgaguGCGccCGCGaGAUCuUCGUCGACg -3'
miRNA:   3'- -CGCUAc----UGCa-GCGC-CUAG-AGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 50247 0.7 0.619193
Target:  5'- cUGA-GGCGUCGCuGGAgcgggCUgGUCGGCa -3'
miRNA:   3'- cGCUaCUGCAGCG-CCUa----GAgCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 49606 0.71 0.5866
Target:  5'- gGCGAguucGcCGUCGaCGGAgaUCUCGUCGcCg -3'
miRNA:   3'- -CGCUa---CuGCAGC-GCCU--AGAGCAGCuG- -5'
16295 3' -53.7 NC_004084.1 + 15552 0.71 0.575799
Target:  5'- -gGAcGACGUCGaCGGGUCg-GUCGAUg -3'
miRNA:   3'- cgCUaCUGCAGC-GCCUAGagCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 18774 0.72 0.533126
Target:  5'- cGCGAguuccucGGCGUCGCGuacGAUCgacUCGUCGAg -3'
miRNA:   3'- -CGCUa------CUGCAGCGC---CUAG---AGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 31150 0.72 0.512208
Target:  5'- aGCGGUu-CGgacCGCGaGAUCUCGUCGAg -3'
miRNA:   3'- -CGCUAcuGCa--GCGC-CUAGAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 807 0.72 0.512208
Target:  5'- uCGA-GGCGaUCGUGGAggucCUCGUCGAUg -3'
miRNA:   3'- cGCUaCUGC-AGCGCCUa---GAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 40943 0.72 0.501877
Target:  5'- -gGAcgGACGUCGCGaacgaguuGAUCcCGUCGACg -3'
miRNA:   3'- cgCUa-CUGCAGCGC--------CUAGaGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 17967 0.72 0.522627
Target:  5'- cCGAUGACG--GCGGAa-UCGUCGGCg -3'
miRNA:   3'- cGCUACUGCagCGCCUagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 565 0.73 0.471455
Target:  5'- -aGGUGACGuUCGC-GAUgUCGUCGAUg -3'
miRNA:   3'- cgCUACUGC-AGCGcCUAgAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 46198 0.73 0.441997
Target:  5'- gGCGA-GAuCGUCGuCGGAUg-CGUCGACg -3'
miRNA:   3'- -CGCUaCU-GCAGC-GCCUAgaGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 6788 0.73 0.432411
Target:  5'- cCGAaGACGUCGgGGAUCagcucccgcgcCGUCGACg -3'
miRNA:   3'- cGCUaCUGCAGCgCCUAGa----------GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 37272 0.73 0.432411
Target:  5'- aCGAaucUGACGUCGUGaGuUCUgCGUCGACg -3'
miRNA:   3'- cGCU---ACUGCAGCGC-CuAGA-GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 14708 0.73 0.441997
Target:  5'- uCGAUGGCGUCcUGGAgCUCGUUGAg -3'
miRNA:   3'- cGCUACUGCAGcGCCUaGAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 3045 0.73 0.461523
Target:  5'- gGCGAUGAuCGccacccUCGaGGAaCUCGUCGACg -3'
miRNA:   3'- -CGCUACU-GC------AGCgCCUaGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 41573 0.73 0.471455
Target:  5'- gGCGAUcGCGUCcgugagcuaGCGGAgaUCGUCGACu -3'
miRNA:   3'- -CGCUAcUGCAG---------CGCCUagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 17329 0.73 0.432411
Target:  5'- cGCGgcGACGgccCGCaucGUCUCGUCGACg -3'
miRNA:   3'- -CGCuaCUGCa--GCGcc-UAGAGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.