miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16295 3' -53.7 NC_004084.1 + 36697 1.12 0.001157
Target:  5'- uGCGAUGACGUCGCGGAUCUCGUCGACg -3'
miRNA:   3'- -CGCUACUGCAGCGCCUAGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 55958 0.81 0.146481
Target:  5'- cGCGAUccaGCGUgGCucGGAUCUCGUCGACg -3'
miRNA:   3'- -CGCUAc--UGCAgCG--CCUAGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 46414 0.78 0.242794
Target:  5'- gGCGAaguuguUGACGUCGCuGGGgaaCUCGUCGAg -3'
miRNA:   3'- -CGCU------ACUGCAGCG-CCUa--GAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 19649 0.75 0.360345
Target:  5'- aCGAUGGCGUCcauGUGGAgccagaacugUUCGUCGACg -3'
miRNA:   3'- cGCUACUGCAG---CGCCUa---------GAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 50907 0.75 0.360345
Target:  5'- uGCGAUGGCccagcaGCGGAUCggccucgaCGUCGACg -3'
miRNA:   3'- -CGCUACUGcag---CGCCUAGa-------GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 39280 0.74 0.386372
Target:  5'- uCGAUcGCGUCGCGGAcUCgaUCGUCGAg -3'
miRNA:   3'- cGCUAcUGCAGCGCCU-AG--AGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 4164 0.74 0.386372
Target:  5'- cCGAUGACGUCGCGGuugCUCGg---- -3'
miRNA:   3'- cGCUACUGCAGCGCCua-GAGCagcug -5'
16295 3' -53.7 NC_004084.1 + 18833 0.74 0.413609
Target:  5'- -gGAgGACGguggCGCGGcUUUCGUCGACg -3'
miRNA:   3'- cgCUaCUGCa---GCGCCuAGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 632 0.74 0.413609
Target:  5'- gGCGAUcuCGUCGUGGAgCUCcUCGACg -3'
miRNA:   3'- -CGCUAcuGCAGCGCCUaGAGcAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 29402 0.74 0.422947
Target:  5'- gGCGGccacuccuggGGCGUCGCGGuugC-CGUCGACg -3'
miRNA:   3'- -CGCUa---------CUGCAGCGCCua-GaGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 6788 0.73 0.432411
Target:  5'- cCGAaGACGUCGgGGAUCagcucccgcgcCGUCGACg -3'
miRNA:   3'- cGCUaCUGCAGCgCCUAGa----------GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 17329 0.73 0.432411
Target:  5'- cGCGgcGACGgccCGCaucGUCUCGUCGACg -3'
miRNA:   3'- -CGCuaCUGCa--GCGcc-UAGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 37272 0.73 0.432411
Target:  5'- aCGAaucUGACGUCGUGaGuUCUgCGUCGACg -3'
miRNA:   3'- cGCU---ACUGCAGCGC-CuAGA-GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 14708 0.73 0.441997
Target:  5'- uCGAUGGCGUCcUGGAgCUCGUUGAg -3'
miRNA:   3'- cGCUACUGCAGcGCCUaGAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 46198 0.73 0.441997
Target:  5'- gGCGA-GAuCGUCGuCGGAUg-CGUCGACg -3'
miRNA:   3'- -CGCUaCU-GCAGC-GCCUAgaGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 3045 0.73 0.461523
Target:  5'- gGCGAUGAuCGccacccUCGaGGAaCUCGUCGACg -3'
miRNA:   3'- -CGCUACU-GC------AGCgCCUaGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 41573 0.73 0.471455
Target:  5'- gGCGAUcGCGUCcgugagcuaGCGGAgaUCGUCGACu -3'
miRNA:   3'- -CGCUAcUGCAG---------CGCCUagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 565 0.73 0.471455
Target:  5'- -aGGUGACGuUCGC-GAUgUCGUCGAUg -3'
miRNA:   3'- cgCUACUGC-AGCGcCUAgAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 40943 0.72 0.501877
Target:  5'- -gGAcgGACGUCGCGaacgaguuGAUCcCGUCGACg -3'
miRNA:   3'- cgCUa-CUGCAGCGC--------CUAGaGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 31150 0.72 0.512208
Target:  5'- aGCGGUu-CGgacCGCGaGAUCUCGUCGAg -3'
miRNA:   3'- -CGCUAcuGCa--GCGC-CUAGAGCAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.