miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16295 3' -53.7 NC_004084.1 + 807 0.72 0.512208
Target:  5'- uCGA-GGCGaUCGUGGAggucCUCGUCGAUg -3'
miRNA:   3'- cGCUaCUGC-AGCGCCUa---GAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 17967 0.72 0.522627
Target:  5'- cCGAUGACG--GCGGAa-UCGUCGGCg -3'
miRNA:   3'- cGCUACUGCagCGCCUagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 18774 0.72 0.533126
Target:  5'- cGCGAguuccucGGCGUCGCGuacGAUCgacUCGUCGAg -3'
miRNA:   3'- -CGCUa------CUGCAGCGC---CUAG---AGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 15552 0.71 0.575799
Target:  5'- -gGAcGACGUCGaCGGGUCg-GUCGAUg -3'
miRNA:   3'- cgCUaCUGCAGC-GCCUAGagCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 49606 0.71 0.5866
Target:  5'- gGCGAguucGcCGUCGaCGGAgaUCUCGUCGcCg -3'
miRNA:   3'- -CGCUa---CuGCAGC-GCCU--AGAGCAGCuG- -5'
16295 3' -53.7 NC_004084.1 + 36139 0.7 0.607217
Target:  5'- cGCGAgguGCGUUGCcucgacuGGAUCgaCGUCGACg -3'
miRNA:   3'- -CGCUac-UGCAGCG-------CCUAGa-GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 53708 0.7 0.608305
Target:  5'- uUGGUaGCuGUCGauGAUCUCGUCGGCu -3'
miRNA:   3'- cGCUAcUG-CAGCgcCUAGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 16515 0.7 0.608305
Target:  5'- gGCGAUcGCGUCGcCGcGGUCgUCGUgGACc -3'
miRNA:   3'- -CGCUAcUGCAGC-GC-CUAG-AGCAgCUG- -5'
16295 3' -53.7 NC_004084.1 + 51326 0.7 0.619193
Target:  5'- gGCGAUcgaguGCGccCGCGaGAUCuUCGUCGACg -3'
miRNA:   3'- -CGCUAc----UGCa-GCGC-CUAG-AGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 50247 0.7 0.619193
Target:  5'- cUGA-GGCGUCGCuGGAgcgggCUgGUCGGCa -3'
miRNA:   3'- cGCUaCUGCAGCG-CCUa----GAgCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 2290 0.7 0.630091
Target:  5'- uCGAgGGCaUCGCGGGUCUgGUCGuGCu -3'
miRNA:   3'- cGCUaCUGcAGCGCCUAGAgCAGC-UG- -5'
16295 3' -53.7 NC_004084.1 + 52590 0.7 0.630091
Target:  5'- gGCGgcGugGUCcgGUGGGUCgaggcaGUCGACa -3'
miRNA:   3'- -CGCuaCugCAG--CGCCUAGag----CAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 1829 0.7 0.651883
Target:  5'- aCGAUG-CaGUUGCGGAcggugaacUCuUCGUCGACg -3'
miRNA:   3'- cGCUACuG-CAGCGCCU--------AG-AGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 5146 0.7 0.651883
Target:  5'- cGCcagGACGUCGCccggcccGAUCUCGUCGcCg -3'
miRNA:   3'- -CGcuaCUGCAGCGc------CUAGAGCAGCuG- -5'
16295 3' -53.7 NC_004084.1 + 48860 0.69 0.662758
Target:  5'- cGUGAUGgagaACGUCcCGGggCUCG-CGACg -3'
miRNA:   3'- -CGCUAC----UGCAGcGCCuaGAGCaGCUG- -5'
16295 3' -53.7 NC_004084.1 + 10509 0.69 0.673604
Target:  5'- cGCGcgGcACcUCGCGGAgCgacCGUCGACg -3'
miRNA:   3'- -CGCuaC-UGcAGCGCCUaGa--GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 37413 0.69 0.673604
Target:  5'- cCGAUGAUGgaCGCuuGGAUCUCGauagCGGCg -3'
miRNA:   3'- cGCUACUGCa-GCG--CCUAGAGCa---GCUG- -5'
16295 3' -53.7 NC_004084.1 + 22342 0.69 0.684412
Target:  5'- gGCGAccuCGUCGCGGucCUCGUCGu- -3'
miRNA:   3'- -CGCUacuGCAGCGCCuaGAGCAGCug -5'
16295 3' -53.7 NC_004084.1 + 37236 0.69 0.684412
Target:  5'- gGCGAgaagaaccGCGUCcCGGcgCUCGUCGAg -3'
miRNA:   3'- -CGCUac------UGCAGcGCCuaGAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 46551 0.69 0.705871
Target:  5'- ----cGACGUC-CGGAUCgUCGUCGGu -3'
miRNA:   3'- cgcuaCUGCAGcGCCUAG-AGCAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.