miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16295 3' -53.7 NC_004084.1 + 36139 0.7 0.607217
Target:  5'- cGCGAgguGCGUUGCcucgacuGGAUCgaCGUCGACg -3'
miRNA:   3'- -CGCUac-UGCAGCG-------CCUAGa-GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 36697 1.12 0.001157
Target:  5'- uGCGAUGACGUCGCGGAUCUCGUCGACg -3'
miRNA:   3'- -CGCUACUGCAGCGCCUAGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 37236 0.69 0.684412
Target:  5'- gGCGAgaagaaccGCGUCcCGGcgCUCGUCGAg -3'
miRNA:   3'- -CGCUac------UGCAGcGCCuaGAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 37272 0.73 0.432411
Target:  5'- aCGAaucUGACGUCGUGaGuUCUgCGUCGACg -3'
miRNA:   3'- cGCU---ACUGCAGCGC-CuAGA-GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 37413 0.69 0.673604
Target:  5'- cCGAUGAUGgaCGCuuGGAUCUCGauagCGGCg -3'
miRNA:   3'- cGCUACUGCa-GCG--CCUAGAGCa---GCUG- -5'
16295 3' -53.7 NC_004084.1 + 39095 0.68 0.758084
Target:  5'- aGUGA-GACaGUCGCccgucGAUCgUCGUCGACc -3'
miRNA:   3'- -CGCUaCUG-CAGCGc----CUAG-AGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 39280 0.74 0.386372
Target:  5'- uCGAUcGCGUCGCGGAcUCgaUCGUCGAg -3'
miRNA:   3'- cGCUAcUGCAGCGCCU-AG--AGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 40943 0.72 0.501877
Target:  5'- -gGAcgGACGUCGCGaacgaguuGAUCcCGUCGACg -3'
miRNA:   3'- cgCUa-CUGCAGCGC--------CUAGaGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 41573 0.73 0.471455
Target:  5'- gGCGAUcGCGUCcgugagcuaGCGGAgaUCGUCGACu -3'
miRNA:   3'- -CGCUAcUGCAG---------CGCCUagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 46198 0.73 0.441997
Target:  5'- gGCGA-GAuCGUCGuCGGAUg-CGUCGACg -3'
miRNA:   3'- -CGCUaCU-GCAGC-GCCUAgaGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 46414 0.78 0.242794
Target:  5'- gGCGAaguuguUGACGUCGCuGGGgaaCUCGUCGAg -3'
miRNA:   3'- -CGCU------ACUGCAGCG-CCUa--GAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 46551 0.69 0.705871
Target:  5'- ----cGACGUC-CGGAUCgUCGUCGGu -3'
miRNA:   3'- cgcuaCUGCAGcGCCUAG-AGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 48656 0.66 0.851718
Target:  5'- cCGAUGAUGgaaGCGGG-CUCauUCGACa -3'
miRNA:   3'- cGCUACUGCag-CGCCUaGAGc-AGCUG- -5'
16295 3' -53.7 NC_004084.1 + 48860 0.69 0.662758
Target:  5'- cGUGAUGgagaACGUCcCGGggCUCG-CGACg -3'
miRNA:   3'- -CGCUAC----UGCAGcGCCuaGAGCaGCUG- -5'
16295 3' -53.7 NC_004084.1 + 49295 0.67 0.807143
Target:  5'- gGCGuuccgGAUGUacacugaGCGuGAgCUCGUCGACa -3'
miRNA:   3'- -CGCua---CUGCAg------CGC-CUaGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 49342 0.66 0.834505
Target:  5'- gGCGAUcgUGUCGaGGugaUCGUCGACg -3'
miRNA:   3'- -CGCUAcuGCAGCgCCuagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 49606 0.71 0.5866
Target:  5'- gGCGAguucGcCGUCGaCGGAgaUCUCGUCGcCg -3'
miRNA:   3'- -CGCUa---CuGCAGC-GCCU--AGAGCAGCuG- -5'
16295 3' -53.7 NC_004084.1 + 50247 0.7 0.619193
Target:  5'- cUGA-GGCGUCGCuGGAgcgggCUgGUCGGCa -3'
miRNA:   3'- cGCUaCUGCAGCG-CCUa----GAgCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 50907 0.75 0.360345
Target:  5'- uGCGAUGGCccagcaGCGGAUCggccucgaCGUCGACg -3'
miRNA:   3'- -CGCUACUGcag---CGCCUAGa-------GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 51326 0.7 0.619193
Target:  5'- gGCGAUcgaguGCGccCGCGaGAUCuUCGUCGACg -3'
miRNA:   3'- -CGCUAc----UGCa-GCGC-CUAG-AGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.