Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 51752 | 0.68 | 0.727046 |
Target: 5'- aGCuucGUGGCGUCGuCGGGcUCuUCGUCGGg -3' miRNA: 3'- -CGc--UACUGCAGC-GCCU-AG-AGCAGCUg -5' |
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16295 | 3' | -53.7 | NC_004084.1 | + | 52590 | 0.7 | 0.630091 |
Target: 5'- gGCGgcGugGUCcgGUGGGUCgaggcaGUCGACa -3' miRNA: 3'- -CGCuaCugCAG--CGCCUAGag----CAGCUG- -5' |
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16295 | 3' | -53.7 | NC_004084.1 | + | 53131 | 0.67 | 0.807143 |
Target: 5'- -gGAUGGCGgaccauccgcUGCGGGaCgUCGUCGACg -3' miRNA: 3'- cgCUACUGCa---------GCGCCUaG-AGCAGCUG- -5' |
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16295 | 3' | -53.7 | NC_004084.1 | + | 53708 | 0.7 | 0.608305 |
Target: 5'- uUGGUaGCuGUCGauGAUCUCGUCGGCu -3' miRNA: 3'- cGCUAcUG-CAGCgcCUAGAGCAGCUG- -5' |
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16295 | 3' | -53.7 | NC_004084.1 | + | 54131 | 0.68 | 0.758084 |
Target: 5'- gGCGG-GACGUCGUGGAcUUUGagGAUg -3' miRNA: 3'- -CGCUaCUGCAGCGCCUaGAGCagCUG- -5' |
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16295 | 3' | -53.7 | NC_004084.1 | + | 54401 | 0.67 | 0.79765 |
Target: 5'- aUGAUGGCGaugCGCGGAacaccgucguUCUCGaaaaagUCGAUg -3' miRNA: 3'- cGCUACUGCa--GCGCCU----------AGAGC------AGCUG- -5' |
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16295 | 3' | -53.7 | NC_004084.1 | + | 55958 | 0.81 | 0.146481 |
Target: 5'- cGCGAUccaGCGUgGCucGGAUCUCGUCGACg -3' miRNA: 3'- -CGCUAc--UGCAgCG--CCUAGAGCAGCUG- -5' |
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16295 | 3' | -53.7 | NC_004084.1 | + | 56432 | 0.67 | 0.807143 |
Target: 5'- aGCGGcacCGUCGCGaacgacGAUCUCGaCGGCg -3' miRNA: 3'- -CGCUacuGCAGCGC------CUAGAGCaGCUG- -5' |
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16295 | 3' | -53.7 | NC_004084.1 | + | 57650 | 0.66 | 0.825581 |
Target: 5'- aCGAUGAauCGUgGaCGGAcUUCGUCGAa -3' miRNA: 3'- cGCUACU--GCAgC-GCCUaGAGCAGCUg -5' |
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16295 | 3' | -53.7 | NC_004084.1 | + | 58040 | 0.67 | 0.79765 |
Target: 5'- gGCGgcGACGUCccCGGG-CUCG-CGGCa -3' miRNA: 3'- -CGCuaCUGCAGc-GCCUaGAGCaGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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