miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16295 3' -53.7 NC_004084.1 + 21924 0.67 0.79765
Target:  5'- uCGAguucGACGUCGaGGAaaUUGUCGGCg -3'
miRNA:   3'- cGCUa---CUGCAGCgCCUagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 19649 0.75 0.360345
Target:  5'- aCGAUGGCGUCcauGUGGAgccagaacugUUCGUCGACg -3'
miRNA:   3'- cGCUACUGCAG---CGCCUa---------GAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 18919 0.68 0.716499
Target:  5'- aCGAUGACGUCcUGGAUgggaucgagggcCUUGUUGGCc -3'
miRNA:   3'- cGCUACUGCAGcGCCUA------------GAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 18833 0.74 0.413609
Target:  5'- -gGAgGACGguggCGCGGcUUUCGUCGACg -3'
miRNA:   3'- cgCUaCUGCa---GCGCCuAGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 18774 0.72 0.533126
Target:  5'- cGCGAguuccucGGCGUCGCGuacGAUCgacUCGUCGAg -3'
miRNA:   3'- -CGCUa------CUGCAGCGC---CUAG---AGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 17967 0.72 0.522627
Target:  5'- cCGAUGACG--GCGGAa-UCGUCGGCg -3'
miRNA:   3'- cGCUACUGCagCGCCUagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 17329 0.73 0.432411
Target:  5'- cGCGgcGACGgccCGCaucGUCUCGUCGACg -3'
miRNA:   3'- -CGCuaCUGCa--GCGcc-UAGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 16515 0.7 0.608305
Target:  5'- gGCGAUcGCGUCGcCGcGGUCgUCGUgGACc -3'
miRNA:   3'- -CGCUAcUGCAGC-GC-CUAG-AGCAgCUG- -5'
16295 3' -53.7 NC_004084.1 + 15552 0.71 0.575799
Target:  5'- -gGAcGACGUCGaCGGGUCg-GUCGAUg -3'
miRNA:   3'- cgCUaCUGCAGC-GCCUAGagCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 14708 0.73 0.441997
Target:  5'- uCGAUGGCGUCcUGGAgCUCGUUGAg -3'
miRNA:   3'- cGCUACUGCAGcGCCUaGAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 14580 0.67 0.79765
Target:  5'- ----cGGCGUCGCGGAugUCUCG-CGcCc -3'
miRNA:   3'- cgcuaCUGCAGCGCCU--AGAGCaGCuG- -5'
16295 3' -53.7 NC_004084.1 + 10509 0.69 0.673604
Target:  5'- cGCGcgGcACcUCGCGGAgCgacCGUCGACg -3'
miRNA:   3'- -CGCuaC-UGcAGCGCCUaGa--GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 10257 0.68 0.757066
Target:  5'- cGCGGUcGGCGUC-CGGAUCacgauguUCGagGGCa -3'
miRNA:   3'- -CGCUA-CUGCAGcGCCUAG-------AGCagCUG- -5'
16295 3' -53.7 NC_004084.1 + 8557 0.66 0.851718
Target:  5'- cGCag-GAC-UCGcCGGAUCUCGcucgCGACg -3'
miRNA:   3'- -CGcuaCUGcAGC-GCCUAGAGCa---GCUG- -5'
16295 3' -53.7 NC_004084.1 + 8182 0.67 0.816457
Target:  5'- aGCGAcgccucagagUGGgGuUCGCGGAUggCGUCGAg -3'
miRNA:   3'- -CGCU----------ACUgC-AGCGCCUAgaGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 6788 0.73 0.432411
Target:  5'- cCGAaGACGUCGgGGAUCagcucccgcgcCGUCGACg -3'
miRNA:   3'- cGCUaCUGCAGCgCCUAGa----------GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 5238 0.67 0.807143
Target:  5'- cGCGAcgGACGaacaCGCugGGGUCagucaucggccUCGUCGACg -3'
miRNA:   3'- -CGCUa-CUGCa---GCG--CCUAG-----------AGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 5146 0.7 0.651883
Target:  5'- cGCcagGACGUCGCccggcccGAUCUCGUCGcCg -3'
miRNA:   3'- -CGcuaCUGCAGCGc------CUAGAGCAGCuG- -5'
16295 3' -53.7 NC_004084.1 + 4309 0.67 0.787986
Target:  5'- cCGGUGA--UCGCGGGcgUCGUCGAg -3'
miRNA:   3'- cGCUACUgcAGCGCCUagAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 4164 0.74 0.386372
Target:  5'- cCGAUGACGUCGCGGuugCUCGg---- -3'
miRNA:   3'- cGCUACUGCAGCGCCua-GAGCagcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.