miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16295 3' -53.7 NC_004084.1 + 26281 0.67 0.79765
Target:  5'- aUGGUGcCGcUCGCGaGGUCU-GUCGACc -3'
miRNA:   3'- cGCUACuGC-AGCGC-CUAGAgCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 48860 0.69 0.662758
Target:  5'- cGUGAUGgagaACGUCcCGGggCUCG-CGACg -3'
miRNA:   3'- -CGCUAC----UGCAGcGCCuaGAGCaGCUG- -5'
16295 3' -53.7 NC_004084.1 + 37413 0.69 0.673604
Target:  5'- cCGAUGAUGgaCGCuuGGAUCUCGauagCGGCg -3'
miRNA:   3'- cGCUACUGCa-GCG--CCUAGAGCa---GCUG- -5'
16295 3' -53.7 NC_004084.1 + 37236 0.69 0.684412
Target:  5'- gGCGAgaagaaccGCGUCcCGGcgCUCGUCGAg -3'
miRNA:   3'- -CGCUac------UGCAGcGCCuaGAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 30605 0.68 0.7375
Target:  5'- -aGGUGGCG-CG-GGAUCUUcUCGACg -3'
miRNA:   3'- cgCUACUGCaGCgCCUAGAGcAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 32237 0.68 0.758084
Target:  5'- aCGccGACgGUCGUugGGAcuacguUCUCGUCGACu -3'
miRNA:   3'- cGCuaCUG-CAGCG--CCU------AGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 4309 0.67 0.787986
Target:  5'- cCGGUGA--UCGCGGGcgUCGUCGAg -3'
miRNA:   3'- cGCUACUgcAGCGCCUagAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 21924 0.67 0.79765
Target:  5'- uCGAguucGACGUCGaGGAaaUUGUCGGCg -3'
miRNA:   3'- cGCUa---CUGCAGCgCCUagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 58040 0.67 0.79765
Target:  5'- gGCGgcGACGUCccCGGG-CUCG-CGGCa -3'
miRNA:   3'- -CGCuaCUGCAGc-GCCUaGAGCaGCUG- -5'
16295 3' -53.7 NC_004084.1 + 52590 0.7 0.630091
Target:  5'- gGCGgcGugGUCcgGUGGGUCgaggcaGUCGACa -3'
miRNA:   3'- -CGCuaCugCAG--CGCCUAGag----CAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 51326 0.7 0.619193
Target:  5'- gGCGAUcgaguGCGccCGCGaGAUCuUCGUCGACg -3'
miRNA:   3'- -CGCUAc----UGCa-GCGC-CUAG-AGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 50247 0.7 0.619193
Target:  5'- cUGA-GGCGUCGCuGGAgcgggCUgGUCGGCa -3'
miRNA:   3'- cGCUaCUGCAGCG-CCUa----GAgCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 50907 0.75 0.360345
Target:  5'- uGCGAUGGCccagcaGCGGAUCggccucgaCGUCGACg -3'
miRNA:   3'- -CGCUACUGcag---CGCCUAGa-------GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 39280 0.74 0.386372
Target:  5'- uCGAUcGCGUCGCGGAcUCgaUCGUCGAg -3'
miRNA:   3'- cGCUAcUGCAGCGCCU-AG--AGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 14708 0.73 0.441997
Target:  5'- uCGAUGGCGUCcUGGAgCUCGUUGAg -3'
miRNA:   3'- cGCUACUGCAGcGCCUaGAGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 3045 0.73 0.461523
Target:  5'- gGCGAUGAuCGccacccUCGaGGAaCUCGUCGACg -3'
miRNA:   3'- -CGCUACU-GC------AGCgCCUaGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 41573 0.73 0.471455
Target:  5'- gGCGAUcGCGUCcgugagcuaGCGGAgaUCGUCGACu -3'
miRNA:   3'- -CGCUAcUGCAG---------CGCCUagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 40943 0.72 0.501877
Target:  5'- -gGAcgGACGUCGCGaacgaguuGAUCcCGUCGACg -3'
miRNA:   3'- cgCUa-CUGCAGCGC--------CUAGaGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 17967 0.72 0.522627
Target:  5'- cCGAUGACG--GCGGAa-UCGUCGGCg -3'
miRNA:   3'- cGCUACUGCagCGCCUagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 15552 0.71 0.575799
Target:  5'- -gGAcGACGUCGaCGGGUCg-GUCGAUg -3'
miRNA:   3'- cgCUaCUGCAGC-GCCUAGagCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.