Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 16295 | 3' | -53.7 | NC_004084.1 | + | 54131 | 0.68 | 0.758084 |
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Target: 5'- gGCGG-GACGUCGUGGAcUUUGagGAUg -3' miRNA: 3'- -CGCUaCUGCAGCGCCUaGAGCagCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 10509 | 0.69 | 0.673604 |
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Target: 5'- cGCGcgGcACcUCGCGGAgCgacCGUCGACg -3' miRNA: 3'- -CGCuaC-UGcAGCGCCUaGa--GCAGCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 22342 | 0.69 | 0.684412 |
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Target: 5'- gGCGAccuCGUCGCGGucCUCGUCGu- -3' miRNA: 3'- -CGCUacuGCAGCGCCuaGAGCAGCug -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 46551 | 0.69 | 0.705871 |
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Target: 5'- ----cGACGUC-CGGAUCgUCGUCGGu -3' miRNA: 3'- cgcuaCUGCAGcGCCUAG-AGCAGCUg -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 18919 | 0.68 | 0.716499 |
|
Target: 5'- aCGAUGACGUCcUGGAUgggaucgagggcCUUGUUGGCc -3' miRNA: 3'- cGCUACUGCAGcGCCUA------------GAGCAGCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 51752 | 0.68 | 0.727046 |
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Target: 5'- aGCuucGUGGCGUCGuCGGGcUCuUCGUCGGg -3' miRNA: 3'- -CGc--UACUGCAGC-GCCU-AG-AGCAGCUg -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 30924 | 0.68 | 0.74785 |
|
Target: 5'- -gGAaGACGUCGaucg-CUCGUCGACg -3' miRNA: 3'- cgCUaCUGCAGCgccuaGAGCAGCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 10257 | 0.68 | 0.757066 |
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Target: 5'- cGCGGUcGGCGUC-CGGAUCacgauguUCGagGGCa -3' miRNA: 3'- -CGCUA-CUGCAGcGCCUAG-------AGCagCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 39095 | 0.68 | 0.758084 |
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Target: 5'- aGUGA-GACaGUCGCccgucGAUCgUCGUCGACc -3' miRNA: 3'- -CGCUaCUG-CAGCGc----CUAG-AGCAGCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 24044 | 0.66 | 0.85999 |
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Target: 5'- aGCGG-GAC-UCGaCGGAUCUCcuuUCGAUa -3' miRNA: 3'- -CGCUaCUGcAGC-GCCUAGAGc--AGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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