miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16295 3' -53.7 NC_004084.1 + 24044 0.66 0.85999
Target:  5'- aGCGG-GAC-UCGaCGGAUCUCcuuUCGAUa -3'
miRNA:   3'- -CGCUaCUGcAGC-GCCUAGAGc--AGCUG- -5'
16295 3' -53.7 NC_004084.1 + 46551 0.69 0.705871
Target:  5'- ----cGACGUC-CGGAUCgUCGUCGGu -3'
miRNA:   3'- cgcuaCUGCAGcGCCUAG-AGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 10509 0.69 0.673604
Target:  5'- cGCGcgGcACcUCGCGGAgCgacCGUCGACg -3'
miRNA:   3'- -CGCuaC-UGcAGCGCCUaGa--GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 36697 1.12 0.001157
Target:  5'- uGCGAUGACGUCGCGGAUCUCGUCGACg -3'
miRNA:   3'- -CGCUACUGCAGCGCCUAGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 2 0.66 0.84322
Target:  5'- uUGGUGA-GUCGgGGGUCUUcgaaGUCGAg -3'
miRNA:   3'- cGCUACUgCAGCgCCUAGAG----CAGCUg -5'
16295 3' -53.7 NC_004084.1 + 49342 0.66 0.834505
Target:  5'- gGCGAUcgUGUCGaGGugaUCGUCGACg -3'
miRNA:   3'- -CGCUAcuGCAGCgCCuagAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 8182 0.67 0.816457
Target:  5'- aGCGAcgccucagagUGGgGuUCGCGGAUggCGUCGAg -3'
miRNA:   3'- -CGCU----------ACUgC-AGCGCCUAgaGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 5238 0.67 0.807143
Target:  5'- cGCGAcgGACGaacaCGCugGGGUCagucaucggccUCGUCGACg -3'
miRNA:   3'- -CGCUa-CUGCa---GCG--CCUAG-----------AGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 54131 0.68 0.758084
Target:  5'- gGCGG-GACGUCGUGGAcUUUGagGAUg -3'
miRNA:   3'- -CGCUaCUGCAGCGCCUaGAGCagCUG- -5'
16295 3' -53.7 NC_004084.1 + 18919 0.68 0.716499
Target:  5'- aCGAUGACGUCcUGGAUgggaucgagggcCUUGUUGGCc -3'
miRNA:   3'- cGCUACUGCAGcGCCUA------------GAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 10257 0.68 0.757066
Target:  5'- cGCGGUcGGCGUC-CGGAUCacgauguUCGagGGCa -3'
miRNA:   3'- -CGCUA-CUGCAGcGCCUAG-------AGCagCUG- -5'
16295 3' -53.7 NC_004084.1 + 54401 0.67 0.79765
Target:  5'- aUGAUGGCGaugCGCGGAacaccgucguUCUCGaaaaagUCGAUg -3'
miRNA:   3'- cGCUACUGCa--GCGCCU----------AGAGC------AGCUG- -5'
16295 3' -53.7 NC_004084.1 + 31413 0.66 0.857533
Target:  5'- gGCGAagucgcaGACGaCGCGGccgcgauggaucugGUCUCuGUCGACc -3'
miRNA:   3'- -CGCUa------CUGCaGCGCC--------------UAGAG-CAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 30924 0.68 0.74785
Target:  5'- -gGAaGACGUCGaucg-CUCGUCGACg -3'
miRNA:   3'- cgCUaCUGCAGCgccuaGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 8557 0.66 0.851718
Target:  5'- cGCag-GAC-UCGcCGGAUCUCGcucgCGACg -3'
miRNA:   3'- -CGcuaCUGcAGC-GCCUAGAGCa---GCUG- -5'
16295 3' -53.7 NC_004084.1 + 14580 0.67 0.79765
Target:  5'- ----cGGCGUCGCGGAugUCUCG-CGcCc -3'
miRNA:   3'- cgcuaCUGCAGCGCCU--AGAGCaGCuG- -5'
16295 3' -53.7 NC_004084.1 + 51752 0.68 0.727046
Target:  5'- aGCuucGUGGCGUCGuCGGGcUCuUCGUCGGg -3'
miRNA:   3'- -CGc--UACUGCAGC-GCCU-AG-AGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 22342 0.69 0.684412
Target:  5'- gGCGAccuCGUCGCGGucCUCGUCGu- -3'
miRNA:   3'- -CGCUacuGCAGCGCCuaGAGCAGCug -5'
16295 3' -53.7 NC_004084.1 + 48656 0.66 0.851718
Target:  5'- cCGAUGAUGgaaGCGGG-CUCauUCGACa -3'
miRNA:   3'- cGCUACUGCag-CGCCUaGAGc-AGCUG- -5'
16295 3' -53.7 NC_004084.1 + 658 0.66 0.825581
Target:  5'- ----cGGCGUCGUGGuagguguggauGUCggcuUCGUCGACg -3'
miRNA:   3'- cgcuaCUGCAGCGCC-----------UAG----AGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.