miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16295 3' -53.7 NC_004084.1 + 36139 0.7 0.607217
Target:  5'- cGCGAgguGCGUUGCcucgacuGGAUCgaCGUCGACg -3'
miRNA:   3'- -CGCUac-UGCAGCG-------CCUAGa-GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 53708 0.7 0.608305
Target:  5'- uUGGUaGCuGUCGauGAUCUCGUCGGCu -3'
miRNA:   3'- cGCUAcUG-CAGCgcCUAGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 10509 0.69 0.673604
Target:  5'- cGCGcgGcACcUCGCGGAgCgacCGUCGACg -3'
miRNA:   3'- -CGCuaC-UGcAGCGCCUaGa--GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 18919 0.68 0.716499
Target:  5'- aCGAUGACGUCcUGGAUgggaucgagggcCUUGUUGGCc -3'
miRNA:   3'- cGCUACUGCAGcGCCUA------------GAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 632 0.74 0.413609
Target:  5'- gGCGAUcuCGUCGUGGAgCUCcUCGACg -3'
miRNA:   3'- -CGCUAcuGCAGCGCCUaGAGcAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 565 0.73 0.471455
Target:  5'- -aGGUGACGuUCGC-GAUgUCGUCGAUg -3'
miRNA:   3'- cgCUACUGC-AGCGcCUAgAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 2290 0.7 0.630091
Target:  5'- uCGAgGGCaUCGCGGGUCUgGUCGuGCu -3'
miRNA:   3'- cGCUaCUGcAGCGCCUAGAgCAGC-UG- -5'
16295 3' -53.7 NC_004084.1 + 51752 0.68 0.727046
Target:  5'- aGCuucGUGGCGUCGuCGGGcUCuUCGUCGGg -3'
miRNA:   3'- -CGc--UACUGCAGC-GCCU-AG-AGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 807 0.72 0.512208
Target:  5'- uCGA-GGCGaUCGUGGAggucCUCGUCGAUg -3'
miRNA:   3'- cGCUaCUGC-AGCGCCUa---GAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 30924 0.68 0.74785
Target:  5'- -gGAaGACGUCGaucg-CUCGUCGACg -3'
miRNA:   3'- cgCUaCUGCAGCgccuaGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 16515 0.7 0.608305
Target:  5'- gGCGAUcGCGUCGcCGcGGUCgUCGUgGACc -3'
miRNA:   3'- -CGCUAcUGCAGC-GC-CUAG-AGCAgCUG- -5'
16295 3' -53.7 NC_004084.1 + 49606 0.71 0.5866
Target:  5'- gGCGAguucGcCGUCGaCGGAgaUCUCGUCGcCg -3'
miRNA:   3'- -CGCUa---CuGCAGC-GCCU--AGAGCAGCuG- -5'
16295 3' -53.7 NC_004084.1 + 1829 0.7 0.651883
Target:  5'- aCGAUG-CaGUUGCGGAcggugaacUCuUCGUCGACg -3'
miRNA:   3'- cGCUACuG-CAGCGCCU--------AG-AGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 5146 0.7 0.651883
Target:  5'- cGCcagGACGUCGCccggcccGAUCUCGUCGcCg -3'
miRNA:   3'- -CGcuaCUGCAGCGc------CUAGAGCAGCuG- -5'
16295 3' -53.7 NC_004084.1 + 22342 0.69 0.684412
Target:  5'- gGCGAccuCGUCGCGGucCUCGUCGu- -3'
miRNA:   3'- -CGCUacuGCAGCGCCuaGAGCAGCug -5'
16295 3' -53.7 NC_004084.1 + 46551 0.69 0.705871
Target:  5'- ----cGACGUC-CGGAUCgUCGUCGGu -3'
miRNA:   3'- cgcuaCUGCAGcGCCUAG-AGCAGCUg -5'
16295 3' -53.7 NC_004084.1 + 36697 1.12 0.001157
Target:  5'- uGCGAUGACGUCGCGGAUCUCGUCGACg -3'
miRNA:   3'- -CGCUACUGCAGCGCCUAGAGCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 4164 0.74 0.386372
Target:  5'- cCGAUGACGUCGCGGuugCUCGg---- -3'
miRNA:   3'- cGCUACUGCAGCGCCua-GAGCagcug -5'
16295 3' -53.7 NC_004084.1 + 6788 0.73 0.432411
Target:  5'- cCGAaGACGUCGgGGAUCagcucccgcgcCGUCGACg -3'
miRNA:   3'- cGCUaCUGCAGCgCCUAGa----------GCAGCUG- -5'
16295 3' -53.7 NC_004084.1 + 46198 0.73 0.441997
Target:  5'- gGCGA-GAuCGUCGuCGGAUg-CGUCGACg -3'
miRNA:   3'- -CGCUaCU-GCAGC-GCCUAgaGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.