Results 41 - 60 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 14580 | 0.67 | 0.79765 |
Target: 5'- ----cGGCGUCGCGGAugUCUCG-CGcCc -3' miRNA: 3'- cgcuaCUGCAGCGCCU--AGAGCaGCuG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 24044 | 0.66 | 0.85999 |
Target: 5'- aGCGG-GAC-UCGaCGGAUCUCcuuUCGAUa -3' miRNA: 3'- -CGCUaCUGcAGC-GCCUAGAGc--AGCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 39280 | 0.74 | 0.386372 |
Target: 5'- uCGAUcGCGUCGCGGAcUCgaUCGUCGAg -3' miRNA: 3'- cGCUAcUGCAGCGCCU-AG--AGCAGCUg -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 3441 | 0.66 | 0.85999 |
Target: 5'- cGCGGU-ACGUCGCGGggUUCGgaaUCaACa -3' miRNA: 3'- -CGCUAcUGCAGCGCCuaGAGC---AGcUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 3045 | 0.73 | 0.461523 |
Target: 5'- gGCGAUGAuCGccacccUCGaGGAaCUCGUCGACg -3' miRNA: 3'- -CGCUACU-GC------AGCgCCUaGAGCAGCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 41573 | 0.73 | 0.471455 |
Target: 5'- gGCGAUcGCGUCcgugagcuaGCGGAgaUCGUCGACu -3' miRNA: 3'- -CGCUAcUGCAG---------CGCCUagAGCAGCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 40943 | 0.72 | 0.501877 |
Target: 5'- -gGAcgGACGUCGCGaacgaguuGAUCcCGUCGACg -3' miRNA: 3'- cgCUa-CUGCAGCGC--------CUAGaGCAGCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 31267 | 0.66 | 0.842358 |
Target: 5'- cGCGGucgagcucgaacgUGGCcgGUCGCGGGUCccuaUCGUUGGg -3' miRNA: 3'- -CGCU-------------ACUG--CAGCGCCUAG----AGCAGCUg -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 2567 | 0.66 | 0.834505 |
Target: 5'- cGCGAaGACGUcCGCG----UCGUUGACg -3' miRNA: 3'- -CGCUaCUGCA-GCGCcuagAGCAGCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 50247 | 0.7 | 0.619193 |
Target: 5'- cUGA-GGCGUCGCuGGAgcgggCUgGUCGGCa -3' miRNA: 3'- cGCUaCUGCAGCG-CCUa----GAgCAGCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 51326 | 0.7 | 0.619193 |
Target: 5'- gGCGAUcgaguGCGccCGCGaGAUCuUCGUCGACg -3' miRNA: 3'- -CGCUAc----UGCa-GCGC-CUAG-AGCAGCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 52590 | 0.7 | 0.630091 |
Target: 5'- gGCGgcGugGUCcgGUGGGUCgaggcaGUCGACa -3' miRNA: 3'- -CGCuaCugCAG--CGCCUAGag----CAGCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 26281 | 0.67 | 0.79765 |
Target: 5'- aUGGUGcCGcUCGCGaGGUCU-GUCGACc -3' miRNA: 3'- cGCUACuGC-AGCGC-CUAGAgCAGCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 58040 | 0.67 | 0.79765 |
Target: 5'- gGCGgcGACGUCccCGGG-CUCG-CGGCa -3' miRNA: 3'- -CGCuaCUGCAGc-GCCUaGAGCaGCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 49295 | 0.67 | 0.807143 |
Target: 5'- gGCGuuccgGAUGUacacugaGCGuGAgCUCGUCGACa -3' miRNA: 3'- -CGCua---CUGCAg------CGC-CUaGAGCAGCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 56432 | 0.67 | 0.807143 |
Target: 5'- aGCGGcacCGUCGCGaacgacGAUCUCGaCGGCg -3' miRNA: 3'- -CGCUacuGCAGCGC------CUAGAGCaGCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 57650 | 0.66 | 0.825581 |
Target: 5'- aCGAUGAauCGUgGaCGGAcUUCGUCGAa -3' miRNA: 3'- cGCUACU--GCAgC-GCCUaGAGCAGCUg -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 37236 | 0.69 | 0.684412 |
Target: 5'- gGCGAgaagaaccGCGUCcCGGcgCUCGUCGAg -3' miRNA: 3'- -CGCUac------UGCAGcGCCuaGAGCAGCUg -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 37413 | 0.69 | 0.673604 |
Target: 5'- cCGAUGAUGgaCGCuuGGAUCUCGauagCGGCg -3' miRNA: 3'- cGCUACUGCa-GCG--CCUAGAGCa---GCUG- -5' |
|||||||
16295 | 3' | -53.7 | NC_004084.1 | + | 48860 | 0.69 | 0.662758 |
Target: 5'- cGUGAUGgagaACGUCcCGGggCUCG-CGACg -3' miRNA: 3'- -CGCUAC----UGCAGcGCCuaGAGCaGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home