Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 16295 | 3' | -53.7 | NC_004084.1 | + | 56432 | 0.67 | 0.807143 |
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Target: 5'- aGCGGcacCGUCGCGaacgacGAUCUCGaCGGCg -3' miRNA: 3'- -CGCUacuGCAGCGC------CUAGAGCaGCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 49295 | 0.67 | 0.807143 |
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Target: 5'- gGCGuuccgGAUGUacacugaGCGuGAgCUCGUCGACa -3' miRNA: 3'- -CGCua---CUGCAg------CGC-CUaGAGCAGCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 53131 | 0.67 | 0.807143 |
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Target: 5'- -gGAUGGCGgaccauccgcUGCGGGaCgUCGUCGACg -3' miRNA: 3'- cgCUACUGCa---------GCGCCUaG-AGCAGCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 26281 | 0.67 | 0.79765 |
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Target: 5'- aUGGUGcCGcUCGCGaGGUCU-GUCGACc -3' miRNA: 3'- cGCUACuGC-AGCGC-CUAGAgCAGCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 58040 | 0.67 | 0.79765 |
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Target: 5'- gGCGgcGACGUCccCGGG-CUCG-CGGCa -3' miRNA: 3'- -CGCuaCUGCAGc-GCCUaGAGCaGCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 21924 | 0.67 | 0.79765 |
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Target: 5'- uCGAguucGACGUCGaGGAaaUUGUCGGCg -3' miRNA: 3'- cGCUa---CUGCAGCgCCUagAGCAGCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 4309 | 0.67 | 0.787986 |
|
Target: 5'- cCGGUGA--UCGCGGGcgUCGUCGAg -3' miRNA: 3'- cGCUACUgcAGCGCCUagAGCAGCUg -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 32237 | 0.68 | 0.758084 |
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Target: 5'- aCGccGACgGUCGUugGGAcuacguUCUCGUCGACu -3' miRNA: 3'- cGCuaCUG-CAGCG--CCU------AGAGCAGCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 30605 | 0.68 | 0.7375 |
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Target: 5'- -aGGUGGCG-CG-GGAUCUUcUCGACg -3' miRNA: 3'- cgCUACUGCaGCgCCUAGAGcAGCUG- -5' |
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| 16295 | 3' | -53.7 | NC_004084.1 | + | 19649 | 0.75 | 0.360345 |
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Target: 5'- aCGAUGGCGUCcauGUGGAgccagaacugUUCGUCGACg -3' miRNA: 3'- cGCUACUGCAG---CGCCUa---------GAGCAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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