miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16295 5' -53.5 NC_004084.1 + 7244 0.66 0.825161
Target:  5'- gACGaUCGGCgcGUGCUCG----GCGACCg -3'
miRNA:   3'- -UGC-AGUCGa-CACGAGCguugCGUUGG- -5'
16295 5' -53.5 NC_004084.1 + 2525 0.66 0.825161
Target:  5'- uCGUCuGCaUGUuCUUGCAGaGCAGCCc -3'
miRNA:   3'- uGCAGuCG-ACAcGAGCGUUgCGUUGG- -5'
16295 5' -53.5 NC_004084.1 + 41183 0.66 0.82145
Target:  5'- -gGUCAGCUGggacgaacacgacGCcCGCGACGCuggcgaaacGCCg -3'
miRNA:   3'- ugCAGUCGACa------------CGaGCGUUGCGu--------UGG- -5'
16295 5' -53.5 NC_004084.1 + 35546 0.66 0.806283
Target:  5'- gACcUCGGCggcgaGUGC-CGCcgGACGCAGCUc -3'
miRNA:   3'- -UGcAGUCGa----CACGaGCG--UUGCGUUGG- -5'
16295 5' -53.5 NC_004084.1 + 4525 0.66 0.796558
Target:  5'- uCG-CAGCgcGUGCagGCGAUGCAggGCCu -3'
miRNA:   3'- uGCaGUCGa-CACGagCGUUGCGU--UGG- -5'
16295 5' -53.5 NC_004084.1 + 53579 0.66 0.796558
Target:  5'- gUGcCGGaUGUGCUCGCGACGauCGGCg -3'
miRNA:   3'- uGCaGUCgACACGAGCGUUGC--GUUGg -5'
16295 5' -53.5 NC_004084.1 + 29667 0.66 0.786657
Target:  5'- cGCGccggUAGCUccGgggGUUCGCGACGCggUCg -3'
miRNA:   3'- -UGCa---GUCGA--Ca--CGAGCGUUGCGuuGG- -5'
16295 5' -53.5 NC_004084.1 + 16888 0.66 0.78265
Target:  5'- gGCGUCugcuccgaucgacGCUGUGa--GCAACGUcGCCa -3'
miRNA:   3'- -UGCAGu------------CGACACgagCGUUGCGuUGG- -5'
16295 5' -53.5 NC_004084.1 + 52850 0.67 0.776592
Target:  5'- aGCGgCAGUUGacgaucUGCUCG-AGCGguGCCg -3'
miRNA:   3'- -UGCaGUCGAC------ACGAGCgUUGCguUGG- -5'
16295 5' -53.5 NC_004084.1 + 36215 0.67 0.776592
Target:  5'- aGCGUCGugacGUUGUGCUCGgAGaacuCGCcuACCg -3'
miRNA:   3'- -UGCAGU----CGACACGAGCgUU----GCGu-UGG- -5'
16295 5' -53.5 NC_004084.1 + 28982 0.67 0.776592
Target:  5'- cGCGUUcGCgGUgaaGCUCGCcgucGACGgCAACCg -3'
miRNA:   3'- -UGCAGuCGaCA---CGAGCG----UUGC-GUUGG- -5'
16295 5' -53.5 NC_004084.1 + 30015 0.67 0.776592
Target:  5'- gACGUCAGC---GUUCGCAucgACGCGAa- -3'
miRNA:   3'- -UGCAGUCGacaCGAGCGU---UGCGUUgg -5'
16295 5' -53.5 NC_004084.1 + 44054 0.67 0.756012
Target:  5'- cCGUaCAGaugGUGaucCUCGCcACGCGGCCa -3'
miRNA:   3'- uGCA-GUCga-CAC---GAGCGuUGCGUUGG- -5'
16295 5' -53.5 NC_004084.1 + 1836 0.67 0.756012
Target:  5'- cGCGuUCAcGgUGUgGCUCcuGCAGCGCGACg -3'
miRNA:   3'- -UGC-AGU-CgACA-CGAG--CGUUGCGUUGg -5'
16295 5' -53.5 NC_004084.1 + 28500 0.67 0.745521
Target:  5'- aACG--GGCUGgcgcggGCUCGCAcguucaccucuGCGUGGCCg -3'
miRNA:   3'- -UGCagUCGACa-----CGAGCGU-----------UGCGUUGG- -5'
16295 5' -53.5 NC_004084.1 + 40753 0.67 0.745521
Target:  5'- aGCGUCGccCUGUGCUCGgGuguCGCccaGGCCu -3'
miRNA:   3'- -UGCAGUc-GACACGAGCgUu--GCG---UUGG- -5'
16295 5' -53.5 NC_004084.1 + 1213 0.67 0.734913
Target:  5'- aACGcUGGCUG-GCUCGgCGGCGgGAUCg -3'
miRNA:   3'- -UGCaGUCGACaCGAGC-GUUGCgUUGG- -5'
16295 5' -53.5 NC_004084.1 + 55024 0.68 0.713391
Target:  5'- uGCGUCucGUUGUGCUCGaggaGCuccGCCa -3'
miRNA:   3'- -UGCAGu-CGACACGAGCguugCGu--UGG- -5'
16295 5' -53.5 NC_004084.1 + 29144 0.68 0.69154
Target:  5'- gUGUCGGCgGUGCUgGUGuggucGCGCgGGCCg -3'
miRNA:   3'- uGCAGUCGaCACGAgCGU-----UGCG-UUGG- -5'
16295 5' -53.5 NC_004084.1 + 28993 0.68 0.69154
Target:  5'- gACGUCGGcCUGaUGaC-CGCGAUGCAggaGCCc -3'
miRNA:   3'- -UGCAGUC-GAC-AC-GaGCGUUGCGU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.