Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16295 | 5' | -53.5 | NC_004084.1 | + | 7244 | 0.66 | 0.825161 |
Target: 5'- gACGaUCGGCgcGUGCUCG----GCGACCg -3' miRNA: 3'- -UGC-AGUCGa-CACGAGCguugCGUUGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 2525 | 0.66 | 0.825161 |
Target: 5'- uCGUCuGCaUGUuCUUGCAGaGCAGCCc -3' miRNA: 3'- uGCAGuCG-ACAcGAGCGUUgCGUUGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 41183 | 0.66 | 0.82145 |
Target: 5'- -gGUCAGCUGggacgaacacgacGCcCGCGACGCuggcgaaacGCCg -3' miRNA: 3'- ugCAGUCGACa------------CGaGCGUUGCGu--------UGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 35546 | 0.66 | 0.806283 |
Target: 5'- gACcUCGGCggcgaGUGC-CGCcgGACGCAGCUc -3' miRNA: 3'- -UGcAGUCGa----CACGaGCG--UUGCGUUGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 4525 | 0.66 | 0.796558 |
Target: 5'- uCG-CAGCgcGUGCagGCGAUGCAggGCCu -3' miRNA: 3'- uGCaGUCGa-CACGagCGUUGCGU--UGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 53579 | 0.66 | 0.796558 |
Target: 5'- gUGcCGGaUGUGCUCGCGACGauCGGCg -3' miRNA: 3'- uGCaGUCgACACGAGCGUUGC--GUUGg -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 29667 | 0.66 | 0.786657 |
Target: 5'- cGCGccggUAGCUccGgggGUUCGCGACGCggUCg -3' miRNA: 3'- -UGCa---GUCGA--Ca--CGAGCGUUGCGuuGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 16888 | 0.66 | 0.78265 |
Target: 5'- gGCGUCugcuccgaucgacGCUGUGa--GCAACGUcGCCa -3' miRNA: 3'- -UGCAGu------------CGACACgagCGUUGCGuUGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 52850 | 0.67 | 0.776592 |
Target: 5'- aGCGgCAGUUGacgaucUGCUCG-AGCGguGCCg -3' miRNA: 3'- -UGCaGUCGAC------ACGAGCgUUGCguUGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 36215 | 0.67 | 0.776592 |
Target: 5'- aGCGUCGugacGUUGUGCUCGgAGaacuCGCcuACCg -3' miRNA: 3'- -UGCAGU----CGACACGAGCgUU----GCGu-UGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 28982 | 0.67 | 0.776592 |
Target: 5'- cGCGUUcGCgGUgaaGCUCGCcgucGACGgCAACCg -3' miRNA: 3'- -UGCAGuCGaCA---CGAGCG----UUGC-GUUGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 30015 | 0.67 | 0.776592 |
Target: 5'- gACGUCAGC---GUUCGCAucgACGCGAa- -3' miRNA: 3'- -UGCAGUCGacaCGAGCGU---UGCGUUgg -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 44054 | 0.67 | 0.756012 |
Target: 5'- cCGUaCAGaugGUGaucCUCGCcACGCGGCCa -3' miRNA: 3'- uGCA-GUCga-CAC---GAGCGuUGCGUUGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 1836 | 0.67 | 0.756012 |
Target: 5'- cGCGuUCAcGgUGUgGCUCcuGCAGCGCGACg -3' miRNA: 3'- -UGC-AGU-CgACA-CGAG--CGUUGCGUUGg -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 28500 | 0.67 | 0.745521 |
Target: 5'- aACG--GGCUGgcgcggGCUCGCAcguucaccucuGCGUGGCCg -3' miRNA: 3'- -UGCagUCGACa-----CGAGCGU-----------UGCGUUGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 40753 | 0.67 | 0.745521 |
Target: 5'- aGCGUCGccCUGUGCUCGgGuguCGCccaGGCCu -3' miRNA: 3'- -UGCAGUc-GACACGAGCgUu--GCG---UUGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 1213 | 0.67 | 0.734913 |
Target: 5'- aACGcUGGCUG-GCUCGgCGGCGgGAUCg -3' miRNA: 3'- -UGCaGUCGACaCGAGC-GUUGCgUUGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 55024 | 0.68 | 0.713391 |
Target: 5'- uGCGUCucGUUGUGCUCGaggaGCuccGCCa -3' miRNA: 3'- -UGCAGu-CGACACGAGCguugCGu--UGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 29144 | 0.68 | 0.69154 |
Target: 5'- gUGUCGGCgGUGCUgGUGuggucGCGCgGGCCg -3' miRNA: 3'- uGCAGUCGaCACGAgCGU-----UGCG-UUGG- -5' |
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16295 | 5' | -53.5 | NC_004084.1 | + | 28993 | 0.68 | 0.69154 |
Target: 5'- gACGUCGGcCUGaUGaC-CGCGAUGCAggaGCCc -3' miRNA: 3'- -UGCAGUC-GAC-AC-GaGCGUUGCGU---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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