miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 53320 0.66 0.952379
Target:  5'- gCGAUCGCGGgcuCGGUucacgucuUCGAgGugGa -3'
miRNA:   3'- -GCUAGCGCUguuGCCAu-------AGCUgCugC- -5'
16296 3' -51.2 NC_004084.1 + 50908 0.66 0.952379
Target:  5'- gCGAUgGCccaGCAGCGG-AUCGGCcucGACGu -3'
miRNA:   3'- -GCUAgCGc--UGUUGCCaUAGCUG---CUGC- -5'
16296 3' -51.2 NC_004084.1 + 17328 0.66 0.947903
Target:  5'- ---cCGCGGCGACGGcccgcAUCGucucguCGACGu -3'
miRNA:   3'- gcuaGCGCUGUUGCCa----UAGCu-----GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 7236 0.66 0.947903
Target:  5'- cCGAccUCGaCGAuCGGCGcGUGcUCGGCGACc -3'
miRNA:   3'- -GCU--AGC-GCU-GUUGC-CAU-AGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 5678 0.66 0.947441
Target:  5'- -cGUCGaCGA-GACGGUGaagauacUCGACGAUGg -3'
miRNA:   3'- gcUAGC-GCUgUUGCCAU-------AGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 11406 0.66 0.946508
Target:  5'- uCGAUCGCGACGuccucgaggaacucGCGGUcgucUCGAaguucgUGACu -3'
miRNA:   3'- -GCUAGCGCUGU--------------UGCCAu---AGCU------GCUGc -5'
16296 3' -51.2 NC_004084.1 + 44253 0.66 0.943157
Target:  5'- aCGA-CGgGACGAcCGGccuucaCGACGACGg -3'
miRNA:   3'- -GCUaGCgCUGUU-GCCaua---GCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 15737 0.66 0.943157
Target:  5'- uGAUCGCuGGCAGCcucgcgccGaGUAuucaggcucUCGACGGCGa -3'
miRNA:   3'- gCUAGCG-CUGUUG--------C-CAU---------AGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 14288 0.66 0.943157
Target:  5'- -cGUCGCGA--GCGGcuUCGugGACu -3'
miRNA:   3'- gcUAGCGCUguUGCCauAGCugCUGc -5'
16296 3' -51.2 NC_004084.1 + 22463 0.66 0.943157
Target:  5'- gCGcUCGCGACGGCuGcGUggUGGCGGCu -3'
miRNA:   3'- -GCuAGCGCUGUUG-C-CAuaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 34566 0.66 0.943157
Target:  5'- -cAUCGCGAgGGCGcuggCGGCGACu -3'
miRNA:   3'- gcUAGCGCUgUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 3459 0.66 0.940179
Target:  5'- gGAUCGCGAgCGccgggggaauacggaACGGcguUCGACGuCGa -3'
miRNA:   3'- gCUAGCGCU-GU---------------UGCCau-AGCUGCuGC- -5'
16296 3' -51.2 NC_004084.1 + 13719 0.66 0.938139
Target:  5'- aGAUCccCGACuccguugaaGGUAUCGACGAUa -3'
miRNA:   3'- gCUAGc-GCUGuug------CCAUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 21792 0.66 0.938139
Target:  5'- aCGAUCGCGAgccgaugcaccuCAACGucagCGuCGACGg -3'
miRNA:   3'- -GCUAGCGCU------------GUUGCcauaGCuGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 17287 0.66 0.932845
Target:  5'- gGAggcgGUGGCGGCGGUggCGGCGAg- -3'
miRNA:   3'- gCUag--CGCUGUUGCCAuaGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 32365 0.66 0.932845
Target:  5'- --cUCGU-ACAGCGGUGa-GACGACGa -3'
miRNA:   3'- gcuAGCGcUGUUGCCAUagCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 11183 0.66 0.932845
Target:  5'- aCGAUCGCGgucgaaGCAGCGuGg---GACGACa -3'
miRNA:   3'- -GCUAGCGC------UGUUGC-CauagCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 38335 0.66 0.929536
Target:  5'- aCGGUCGUcuuccgguucgcuccGGCGucguCGGUAUCGACaGCa -3'
miRNA:   3'- -GCUAGCG---------------CUGUu---GCCAUAGCUGcUGc -5'
16296 3' -51.2 NC_004084.1 + 17550 0.66 0.927274
Target:  5'- aCGAgcgUCGaCGACAGCGGag-CGugGgACGc -3'
miRNA:   3'- -GCU---AGC-GCUGUUGCCauaGCugC-UGC- -5'
16296 3' -51.2 NC_004084.1 + 35511 0.66 0.927274
Target:  5'- aCGGUCGCGAgugggaCAuccuGCGcGUGaucgaggaccUCGGCGGCGa -3'
miRNA:   3'- -GCUAGCGCU------GU----UGC-CAU----------AGCUGCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.