miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 13803 0.68 0.864903
Target:  5'- uGGUCGCGACcgaggcgauCGGcccacUCGGCGAUGa -3'
miRNA:   3'- gCUAGCGCUGuu-------GCCau---AGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 29600 0.68 0.87288
Target:  5'- cCGGUCGCGAugcucgcccaCAACGGcaccuggcUGUCGGCuccgGACGu -3'
miRNA:   3'- -GCUAGCGCU----------GUUGCC--------AUAGCUG----CUGC- -5'
16296 3' -51.2 NC_004084.1 + 19137 0.68 0.880607
Target:  5'- aCGAUCGaguccGCGACGcG-AUCGACGACc -3'
miRNA:   3'- -GCUAGCgc---UGUUGC-CaUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 26120 0.68 0.880607
Target:  5'- cCGGUCGCGACGaucGCGuUGUCGGUGAg- -3'
miRNA:   3'- -GCUAGCGCUGU---UGCcAUAGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 56241 0.68 0.87288
Target:  5'- aGAUcCGUGACGACucccgugcuGGUGUCGccuacgaguACGACGu -3'
miRNA:   3'- gCUA-GCGCUGUUG---------CCAUAGC---------UGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 16631 0.68 0.888077
Target:  5'- uCGAUCGUGACGcccuCGucGUCGACGuCGu -3'
miRNA:   3'- -GCUAGCGCUGUu---GCcaUAGCUGCuGC- -5'
16296 3' -51.2 NC_004084.1 + 49343 0.68 0.856683
Target:  5'- gCGAUCGUGuCGA-GGUgAUCGuCGACGu -3'
miRNA:   3'- -GCUAGCGCuGUUgCCA-UAGCuGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 5235 0.68 0.854171
Target:  5'- -aGUCGCGACGgacgaacacgcuGgGGUcagucaucggccucGUCGACGACGu -3'
miRNA:   3'- gcUAGCGCUGU------------UgCCA--------------UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 17161 0.68 0.888077
Target:  5'- aCGAUCGcCGGCGACG---UCGAaGGCGa -3'
miRNA:   3'- -GCUAGC-GCUGUUGCcauAGCUgCUGC- -5'
16296 3' -51.2 NC_004084.1 + 27804 0.68 0.856683
Target:  5'- uGAUCGCGAagggGAUGGacAUCGACcGCGg -3'
miRNA:   3'- gCUAGCGCUg---UUGCCa-UAGCUGcUGC- -5'
16296 3' -51.2 NC_004084.1 + 44354 0.68 0.888077
Target:  5'- uCGGUCGCgguGACAACGG---CGAgCGACa -3'
miRNA:   3'- -GCUAGCG---CUGUUGCCauaGCU-GCUGc -5'
16296 3' -51.2 NC_004084.1 + 44904 0.68 0.878315
Target:  5'- uGAUCccgGCGACGACccgcgccuagcugaGGUGaCGAUGACGu -3'
miRNA:   3'- gCUAG---CGCUGUUG--------------CCAUaGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 44805 0.68 0.880607
Target:  5'- aCGGUCcCGACcacccggucgguGACGGUAUCGAgcUGACc -3'
miRNA:   3'- -GCUAGcGCUG------------UUGCCAUAGCU--GCUGc -5'
16296 3' -51.2 NC_004084.1 + 18454 0.69 0.845647
Target:  5'- aCGAaaucgaGCGAUGACccgcucgaguucgaGGUGUCGACGugGa -3'
miRNA:   3'- -GCUag----CGCUGUUG--------------CCAUAGCUGCugC- -5'
16296 3' -51.2 NC_004084.1 + 27293 0.69 0.830645
Target:  5'- aCGAUCGCGGCGcCGcUGUucaucauccUGGCGACGu -3'
miRNA:   3'- -GCUAGCGCUGUuGCcAUA---------GCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 23358 0.69 0.812225
Target:  5'- aCGAUgGCGACcgccugcCGGUAUCaGGCGAUc -3'
miRNA:   3'- -GCUAgCGCUGuu-----GCCAUAG-CUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 23199 0.69 0.839545
Target:  5'- uCGAUCGCGAUcguCGGc-UCGAuccCGACGa -3'
miRNA:   3'- -GCUAGCGCUGuu-GCCauAGCU---GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 51454 0.69 0.830645
Target:  5'- gCGAgggcCGCGGCGGCuGUAcgggCGACGACc -3'
miRNA:   3'- -GCUa---GCGCUGUUGcCAUa---GCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 35370 0.69 0.821535
Target:  5'- aCGAUCGCGAaguGCGccaagaucacGUCGACGACc -3'
miRNA:   3'- -GCUAGCGCUgu-UGCca--------UAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 7415 0.69 0.836898
Target:  5'- gCGAUCGaCGACGagggcgaugccgACGGUggcgagaccucggaGUCcGACGGCGa -3'
miRNA:   3'- -GCUAGC-GCUGU------------UGCCA--------------UAG-CUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.