Results 101 - 105 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 46497 | 0.76 | 0.433907 |
Target: 5'- uGGUCGCGACGucgcCGGUcgccgaGUUGAUGACGa -3' miRNA: 3'- gCUAGCGCUGUu---GCCA------UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 16516 | 0.78 | 0.378369 |
Target: 5'- gCGAUCGCGuCGccGCGGUcGUCGugGACc -3' miRNA: 3'- -GCUAGCGCuGU--UGCCA-UAGCugCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 42315 | 0.79 | 0.304469 |
Target: 5'- aCGAUCGCGACGAccguCGGgacgagAUCGACGAgGc -3' miRNA: 3'- -GCUAGCGCUGUU----GCCa-----UAGCUGCUgC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 56894 | 0.8 | 0.28314 |
Target: 5'- gGAUCGuCGACAGCGGUGUagagguccucgucggGACGGCGg -3' miRNA: 3'- gCUAGC-GCUGUUGCCAUAg--------------CUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 36539 | 1.11 | 0.002919 |
Target: 5'- cCGAUCGCGACAACGGUAUCGACGACGg -3' miRNA: 3'- -GCUAGCGCUGUUGCCAUAGCUGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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