Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 29395 | 0.7 | 0.790112 |
Target: 5'- aCGGUCGgGcggccacuccugggGCGucGCGGUugccGUCGACGGCGa -3' miRNA: 3'- -GCUAGCgC--------------UGU--UGCCA----UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 17251 | 0.7 | 0.783202 |
Target: 5'- gGAUCuGCGGC--CGGUgcaGUCGGCGAUGc -3' miRNA: 3'- gCUAG-CGCUGuuGCCA---UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 49587 | 0.7 | 0.773199 |
Target: 5'- ---cUGCGACcACuGUGUCGGCGACa -3' miRNA: 3'- gcuaGCGCUGuUGcCAUAGCUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 6318 | 0.7 | 0.773199 |
Target: 5'- cCGA-CGuCGACAucccgGCGGUaacGUCGGCGAUGu -3' miRNA: 3'- -GCUaGC-GCUGU-----UGCCA---UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 47405 | 0.7 | 0.769156 |
Target: 5'- aGggCGCGACGACGaagccgaaggacGUCGGCGACa -3' miRNA: 3'- gCuaGCGCUGUUGCca----------UAGCUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 23199 | 0.69 | 0.839545 |
Target: 5'- uCGAUCGCGAUcguCGGc-UCGAuccCGACGa -3' miRNA: 3'- -GCUAGCGCUGuu-GCCauAGCU---GCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 23358 | 0.69 | 0.812225 |
Target: 5'- aCGAUgGCGACcgccugcCGGUAUCaGGCGAUc -3' miRNA: 3'- -GCUAgCGCUGuu-----GCCAUAG-CUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 35370 | 0.69 | 0.821535 |
Target: 5'- aCGAUCGCGAaguGCGccaagaucacGUCGACGACc -3' miRNA: 3'- -GCUAGCGCUgu-UGCca--------UAGCUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 51454 | 0.69 | 0.830645 |
Target: 5'- gCGAgggcCGCGGCGGCuGUAcgggCGACGACc -3' miRNA: 3'- -GCUa---GCGCUGUUGcCAUa---GCUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 27293 | 0.69 | 0.830645 |
Target: 5'- aCGAUCGCGGCGcCGcUGUucaucauccUGGCGACGu -3' miRNA: 3'- -GCUAGCGCUGUuGCcAUA---------GCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 18454 | 0.69 | 0.845647 |
Target: 5'- aCGAaaucgaGCGAUGACccgcucgaguucgaGGUGUCGACGugGa -3' miRNA: 3'- -GCUag----CGCUGUUG--------------CCAUAGCUGCugC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 7415 | 0.69 | 0.836898 |
Target: 5'- gCGAUCGaCGACGagggcgaugccgACGGUggcgagaccucggaGUCcGACGGCGa -3' miRNA: 3'- -GCUAGC-GCUGU------------UGCCA--------------UAG-CUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 29600 | 0.68 | 0.87288 |
Target: 5'- cCGGUCGCGAugcucgcccaCAACGGcaccuggcUGUCGGCuccgGACGu -3' miRNA: 3'- -GCUAGCGCU----------GUUGCC--------AUAGCUG----CUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 16631 | 0.68 | 0.888077 |
Target: 5'- uCGAUCGUGACGcccuCGucGUCGACGuCGu -3' miRNA: 3'- -GCUAGCGCUGUu---GCcaUAGCUGCuGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 49343 | 0.68 | 0.856683 |
Target: 5'- gCGAUCGUGuCGA-GGUgAUCGuCGACGu -3' miRNA: 3'- -GCUAGCGCuGUUgCCA-UAGCuGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 27804 | 0.68 | 0.856683 |
Target: 5'- uGAUCGCGAagggGAUGGacAUCGACcGCGg -3' miRNA: 3'- gCUAGCGCUg---UUGCCa-UAGCUGcUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 56241 | 0.68 | 0.87288 |
Target: 5'- aGAUcCGUGACGACucccgugcuGGUGUCGccuacgaguACGACGu -3' miRNA: 3'- gCUA-GCGCUGUUG---------CCAUAGC---------UGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 44354 | 0.68 | 0.888077 |
Target: 5'- uCGGUCGCgguGACAACGG---CGAgCGACa -3' miRNA: 3'- -GCUAGCG---CUGUUGCCauaGCU-GCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 5235 | 0.68 | 0.854171 |
Target: 5'- -aGUCGCGACGgacgaacacgcuGgGGUcagucaucggccucGUCGACGACGu -3' miRNA: 3'- gcUAGCGCUGU------------UgCCA--------------UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 19137 | 0.68 | 0.880607 |
Target: 5'- aCGAUCGaguccGCGACGcG-AUCGACGACc -3' miRNA: 3'- -GCUAGCgc---UGUUGC-CaUAGCUGCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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