Results 61 - 80 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 44805 | 0.68 | 0.880607 |
Target: 5'- aCGGUCcCGACcacccggucgguGACGGUAUCGAgcUGACc -3' miRNA: 3'- -GCUAGcGCUG------------UUGCCAUAGCU--GCUGc -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 16631 | 0.68 | 0.888077 |
Target: 5'- uCGAUCGUGACGcccuCGucGUCGACGuCGu -3' miRNA: 3'- -GCUAGCGCUGUu---GCcaUAGCUGCuGC- -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 44354 | 0.68 | 0.888077 |
Target: 5'- uCGGUCGCgguGACAACGG---CGAgCGACa -3' miRNA: 3'- -GCUAGCG---CUGUUGCCauaGCU-GCUGc -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 17161 | 0.68 | 0.888077 |
Target: 5'- aCGAUCGcCGGCGACG---UCGAaGGCGa -3' miRNA: 3'- -GCUAGC-GCUGUUGCcauAGCUgCUGC- -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 49343 | 0.68 | 0.856683 |
Target: 5'- gCGAUCGUGuCGA-GGUgAUCGuCGACGu -3' miRNA: 3'- -GCUAGCGCuGUUgCCA-UAGCuGCUGC- -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 1720 | 0.67 | 0.921427 |
Target: 5'- uGGUCGCGGCGAgucgagcgUGGcGUaGAUGACGa -3' miRNA: 3'- gCUAGCGCUGUU--------GCCaUAgCUGCUGC- -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 33643 | 0.67 | 0.915302 |
Target: 5'- gGAUCauCGACAGCaGUGUCGAuCGAUu -3' miRNA: 3'- gCUAGc-GCUGUUGcCAUAGCU-GCUGc -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 49016 | 0.67 | 0.911495 |
Target: 5'- uCGAUCGUGACcgacacgacguccugGACGGgacggGACGGCa -3' miRNA: 3'- -GCUAGCGCUG---------------UUGCCauag-CUGCUGc -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 848 | 0.67 | 0.908248 |
Target: 5'- ---gCGUGACAugGGUguggaaagagucaGUCGuCGACGu -3' miRNA: 3'- gcuaGCGCUGUugCCA-------------UAGCuGCUGC- -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 4205 | 0.67 | 0.908903 |
Target: 5'- aGAUC-CGACucgagccgcuGACGGUcggaAUCGACGAgGa -3' miRNA: 3'- gCUAGcGCUG----------UUGCCA----UAGCUGCUgC- -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 35229 | 0.67 | 0.908903 |
Target: 5'- aCGAUCGCGAuCGACG---UCGACcaccucuggGACGa -3' miRNA: 3'- -GCUAGCGCU-GUUGCcauAGCUG---------CUGC- -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 5470 | 0.67 | 0.915302 |
Target: 5'- aCGAUCaCGACGACGc---CGACGGCc -3' miRNA: 3'- -GCUAGcGCUGUUGCcauaGCUGCUGc -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 48876 | 0.67 | 0.915302 |
Target: 5'- cCGGggcUCGCGACGAUGca--CGACGGCa -3' miRNA: 3'- -GCU---AGCGCUGUUGCcauaGCUGCUGc -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 43680 | 0.67 | 0.915302 |
Target: 5'- cCGAgugccUGCGACgGACGGgcgcGUCGACGAa- -3' miRNA: 3'- -GCUa----GCGCUG-UUGCCa---UAGCUGCUgc -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 18103 | 0.67 | 0.921427 |
Target: 5'- aCGAUCGaugccagGACAGCGGUucgCGAUccgGAUGg -3' miRNA: 3'- -GCUAGCg------CUGUUGCCAua-GCUG---CUGC- -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 20040 | 0.67 | 0.921427 |
Target: 5'- aCGAUCGCGucucgucaguCGAUGcUGUCGAuacCGACGa -3' miRNA: 3'- -GCUAGCGCu---------GUUGCcAUAGCU---GCUGC- -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 28269 | 0.67 | 0.921427 |
Target: 5'- -cGUCGCGGCuuCGac-UCGugGACGg -3' miRNA: 3'- gcUAGCGCUGuuGCcauAGCugCUGC- -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 18348 | 0.67 | 0.90223 |
Target: 5'- uCGAccaUCcCGACGuucGCGGgGUCGACGGCu -3' miRNA: 3'- -GCU---AGcGCUGU---UGCCaUAGCUGCUGc -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 41574 | 0.67 | 0.908248 |
Target: 5'- gCGAUCGCGuccgugaGCuAGCGGagAUCGuCGACu -3' miRNA: 3'- -GCUAGCGC-------UG-UUGCCa-UAGCuGCUGc -5' |
|||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 3962 | 0.67 | 0.895287 |
Target: 5'- aCGAUcCGCGGCGACaGUG-CGGCG-Ca -3' miRNA: 3'- -GCUA-GCGCUGUUGcCAUaGCUGCuGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home