miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 36539 1.11 0.002919
Target:  5'- cCGAUCGCGACAACGGUAUCGACGACGg -3'
miRNA:   3'- -GCUAGCGCUGUUGCCAUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 56894 0.8 0.28314
Target:  5'- gGAUCGuCGACAGCGGUGUagagguccucgucggGACGGCGg -3'
miRNA:   3'- gCUAGC-GCUGUUGCCAUAg--------------CUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 42315 0.79 0.304469
Target:  5'- aCGAUCGCGACGAccguCGGgacgagAUCGACGAgGc -3'
miRNA:   3'- -GCUAGCGCUGUU----GCCa-----UAGCUGCUgC- -5'
16296 3' -51.2 NC_004084.1 + 16516 0.78 0.378369
Target:  5'- gCGAUCGCGuCGccGCGGUcGUCGugGACc -3'
miRNA:   3'- -GCUAGCGCuGU--UGCCA-UAGCugCUGc -5'
16296 3' -51.2 NC_004084.1 + 46497 0.76 0.433907
Target:  5'- uGGUCGCGACGucgcCGGUcgccgaGUUGAUGACGa -3'
miRNA:   3'- gCUAGCGCUGUu---GCCA------UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 41745 0.76 0.433907
Target:  5'- aCGAUCGgGACGACGc---CGGCGACGa -3'
miRNA:   3'- -GCUAGCgCUGUUGCcauaGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 49782 0.76 0.443616
Target:  5'- -cAUCGCGAUuACGGaGUCGACGGCc -3'
miRNA:   3'- gcUAGCGCUGuUGCCaUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 27061 0.75 0.493894
Target:  5'- uCGAUCGCG-CGAUGcucgacGUCGACGACGa -3'
miRNA:   3'- -GCUAGCGCuGUUGCca----UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 30570 0.75 0.525281
Target:  5'- -cAUCGCGGCGACGG--UCGGCGAa- -3'
miRNA:   3'- gcUAGCGCUGUUGCCauAGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 27189 0.74 0.572575
Target:  5'- aCGAUCGCGACGcugaaugcguaccucGaGGUucgCGACGACGu -3'
miRNA:   3'- -GCUAGCGCUGU---------------UgCCAua-GCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 12110 0.73 0.601006
Target:  5'- uGAUCGCGA--ACGGagucaacGUCGACGACu -3'
miRNA:   3'- gCUAGCGCUguUGCCa------UAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 16917 0.73 0.634024
Target:  5'- gCGAUCGUGGCcggguGCGGUucggcAUCGGCgGGCGu -3'
miRNA:   3'- -GCUAGCGCUGu----UGCCA-----UAGCUG-CUGC- -5'
16296 3' -51.2 NC_004084.1 + 23077 0.73 0.645039
Target:  5'- gCGA-CGCGACGA-GGUggacGUCGGCGACc -3'
miRNA:   3'- -GCUaGCGCUGUUgCCA----UAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 58017 0.72 0.656043
Target:  5'- aGAUCGaCGACGucuGCGacAUCGGCGGCGa -3'
miRNA:   3'- gCUAGC-GCUGU---UGCcaUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 48662 0.72 0.656043
Target:  5'- gGAgCGCGACAucacgaaGGUcgCGACGugGg -3'
miRNA:   3'- gCUaGCGCUGUug-----CCAuaGCUGCugC- -5'
16296 3' -51.2 NC_004084.1 + 57543 0.72 0.677973
Target:  5'- cCGAUUcCGACGGCGacGUCGACGACu -3'
miRNA:   3'- -GCUAGcGCUGUUGCcaUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 16404 0.72 0.682341
Target:  5'- uCGcUCGCGACGgccacucgagcaaagACGGcGUCGAUGugGg -3'
miRNA:   3'- -GCuAGCGCUGU---------------UGCCaUAGCUGCugC- -5'
16296 3' -51.2 NC_004084.1 + 41619 0.72 0.68779
Target:  5'- aCGAaCGCGagGCGACGGUccgggacAUCGACGuCGa -3'
miRNA:   3'- -GCUaGCGC--UGUUGCCA-------UAGCUGCuGC- -5'
16296 3' -51.2 NC_004084.1 + 26896 0.72 0.688878
Target:  5'- gCGAUCGCGGCAuccaucGCGauaGUGgaggCGGCGACu -3'
miRNA:   3'- -GCUAGCGCUGU------UGC---CAUa---GCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 20725 0.72 0.699728
Target:  5'- gGAUCcCGuuGcUGGUGUCGACGACGu -3'
miRNA:   3'- gCUAGcGCugUuGCCAUAGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.