miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 20725 0.72 0.699728
Target:  5'- gGAUCcCGuuGcUGGUGUCGACGACGu -3'
miRNA:   3'- gCUAGcGCugUuGCCAUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 8843 0.71 0.710513
Target:  5'- --cUCGuCGACGaaaaGCGGUacuucgaguacGUCGACGACGg -3'
miRNA:   3'- gcuAGC-GCUGU----UGCCA-----------UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 30419 0.71 0.72122
Target:  5'- uCGAcggGCGGCGACGGaagCGAUGGCGa -3'
miRNA:   3'- -GCUag-CGCUGUUGCCauaGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 2891 0.71 0.741311
Target:  5'- gCGAUCGCGGaggaucccaucauCAacGCGGUGcCGACGAgGa -3'
miRNA:   3'- -GCUAGCGCU-------------GU--UGCCAUaGCUGCUgC- -5'
16296 3' -51.2 NC_004084.1 + 46402 0.71 0.752765
Target:  5'- aCGAUCgGCGACGGCGaaguUGUUGACGuCGc -3'
miRNA:   3'- -GCUAG-CGCUGUUGCc---AUAGCUGCuGC- -5'
16296 3' -51.2 NC_004084.1 + 7065 0.71 0.752765
Target:  5'- uGGcCGCGAucCAGCGGU-UCGugGACa -3'
miRNA:   3'- gCUaGCGCU--GUUGCCAuAGCugCUGc -5'
16296 3' -51.2 NC_004084.1 + 45169 0.71 0.752765
Target:  5'- uCGAUCcCGACGACGGUGaguaCGGCaACGa -3'
miRNA:   3'- -GCUAGcGCUGUUGCCAUa---GCUGcUGC- -5'
16296 3' -51.2 NC_004084.1 + 56440 0.71 0.752765
Target:  5'- -cGUCGCGaACGACGaucUCGACGGCGc -3'
miRNA:   3'- gcUAGCGC-UGUUGCcauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 57623 0.71 0.756894
Target:  5'- aCGAUCGCcucgaccaacacaagGGCGACGaugaAUCGugGACGg -3'
miRNA:   3'- -GCUAGCG---------------CUGUUGCca--UAGCugCUGC- -5'
16296 3' -51.2 NC_004084.1 + 22992 0.7 0.763049
Target:  5'- uCGAccUCGCGA--GCGaG-AUCGACGACGa -3'
miRNA:   3'- -GCU--AGCGCUguUGC-CaUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 2429 0.7 0.763049
Target:  5'- gCGAUCGUGG--GCGGUgaAUCGAccguCGACGa -3'
miRNA:   3'- -GCUAGCGCUguUGCCA--UAGCU----GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 21974 0.7 0.763049
Target:  5'- aGAUCGacacggugcaGACGGCGuacGUCGACGACGc -3'
miRNA:   3'- gCUAGCg---------CUGUUGCca-UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 47405 0.7 0.769156
Target:  5'- aGggCGCGACGACGaagccgaaggacGUCGGCGACa -3'
miRNA:   3'- gCuaGCGCUGUUGCca----------UAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 6318 0.7 0.773199
Target:  5'- cCGA-CGuCGACAucccgGCGGUaacGUCGGCGAUGu -3'
miRNA:   3'- -GCUaGC-GCUGU-----UGCCA---UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 49587 0.7 0.773199
Target:  5'- ---cUGCGACcACuGUGUCGGCGACa -3'
miRNA:   3'- gcuaGCGCUGuUGcCAUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 53230 0.7 0.773199
Target:  5'- -cGUCGUGuCAucuacgagcggGCGGUcGUCGACGGCGa -3'
miRNA:   3'- gcUAGCGCuGU-----------UGCCA-UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 6246 0.7 0.783202
Target:  5'- uCGAUCcCGAC-GCGG--UCGACGAUGa -3'
miRNA:   3'- -GCUAGcGCUGuUGCCauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 17251 0.7 0.783202
Target:  5'- gGAUCuGCGGC--CGGUgcaGUCGGCGAUGc -3'
miRNA:   3'- gCUAG-CGCUGuuGCCA---UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 52577 0.7 0.783202
Target:  5'- uGAUCGCGACGugcuUGGUAaa-GCGACGc -3'
miRNA:   3'- gCUAGCGCUGUu---GCCAUagcUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 1973 0.7 0.784194
Target:  5'- uGAUCGagGACAACGGgaugcagacuacgucGUCGAgGACGc -3'
miRNA:   3'- gCUAGCg-CUGUUGCCa--------------UAGCUgCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.