miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 26120 0.68 0.880607
Target:  5'- cCGGUCGCGACGaucGCGuUGUCGGUGAg- -3'
miRNA:   3'- -GCUAGCGCUGU---UGCcAUAGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 44805 0.68 0.880607
Target:  5'- aCGGUCcCGACcacccggucgguGACGGUAUCGAgcUGACc -3'
miRNA:   3'- -GCUAGcGCUG------------UUGCCAUAGCU--GCUGc -5'
16296 3' -51.2 NC_004084.1 + 44354 0.68 0.888077
Target:  5'- uCGGUCGCgguGACAACGG---CGAgCGACa -3'
miRNA:   3'- -GCUAGCG---CUGUUGCCauaGCU-GCUGc -5'
16296 3' -51.2 NC_004084.1 + 17161 0.68 0.888077
Target:  5'- aCGAUCGcCGGCGACG---UCGAaGGCGa -3'
miRNA:   3'- -GCUAGC-GCUGUUGCcauAGCUgCUGC- -5'
16296 3' -51.2 NC_004084.1 + 16631 0.68 0.888077
Target:  5'- uCGAUCGUGACGcccuCGucGUCGACGuCGu -3'
miRNA:   3'- -GCUAGCGCUGUu---GCcaUAGCUGCuGC- -5'
16296 3' -51.2 NC_004084.1 + 3962 0.67 0.895287
Target:  5'- aCGAUcCGCGGCGACaGUG-CGGCG-Ca -3'
miRNA:   3'- -GCUA-GCGCUGUUGcCAUaGCUGCuGc -5'
16296 3' -51.2 NC_004084.1 + 55254 0.67 0.90223
Target:  5'- -cGUCGaCGACGucuACGG--UCGGCGGCGu -3'
miRNA:   3'- gcUAGC-GCUGU---UGCCauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 18348 0.67 0.90223
Target:  5'- uCGAccaUCcCGACGuucGCGGgGUCGACGGCu -3'
miRNA:   3'- -GCU---AGcGCUGU---UGCCaUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 25102 0.67 0.90223
Target:  5'- ---aCGCGGCGGCGGcaggUGUUGACGcucaACGg -3'
miRNA:   3'- gcuaGCGCUGUUGCC----AUAGCUGC----UGC- -5'
16296 3' -51.2 NC_004084.1 + 41574 0.67 0.908248
Target:  5'- gCGAUCGCGuccgugaGCuAGCGGagAUCGuCGACu -3'
miRNA:   3'- -GCUAGCGC-------UG-UUGCCa-UAGCuGCUGc -5'
16296 3' -51.2 NC_004084.1 + 848 0.67 0.908248
Target:  5'- ---gCGUGACAugGGUguggaaagagucaGUCGuCGACGu -3'
miRNA:   3'- gcuaGCGCUGUugCCA-------------UAGCuGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 4205 0.67 0.908903
Target:  5'- aGAUC-CGACucgagccgcuGACGGUcggaAUCGACGAgGa -3'
miRNA:   3'- gCUAGcGCUG----------UUGCCA----UAGCUGCUgC- -5'
16296 3' -51.2 NC_004084.1 + 35229 0.67 0.908903
Target:  5'- aCGAUCGCGAuCGACG---UCGACcaccucuggGACGa -3'
miRNA:   3'- -GCUAGCGCU-GUUGCcauAGCUG---------CUGC- -5'
16296 3' -51.2 NC_004084.1 + 49016 0.67 0.911495
Target:  5'- uCGAUCGUGACcgacacgacguccugGACGGgacggGACGGCa -3'
miRNA:   3'- -GCUAGCGCUG---------------UUGCCauag-CUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 33643 0.67 0.915302
Target:  5'- gGAUCauCGACAGCaGUGUCGAuCGAUu -3'
miRNA:   3'- gCUAGc-GCUGUUGcCAUAGCU-GCUGc -5'
16296 3' -51.2 NC_004084.1 + 43680 0.67 0.915302
Target:  5'- cCGAgugccUGCGACgGACGGgcgcGUCGACGAa- -3'
miRNA:   3'- -GCUa----GCGCUG-UUGCCa---UAGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 48876 0.67 0.915302
Target:  5'- cCGGggcUCGCGACGAUGca--CGACGGCa -3'
miRNA:   3'- -GCU---AGCGCUGUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 5470 0.67 0.915302
Target:  5'- aCGAUCaCGACGACGc---CGACGGCc -3'
miRNA:   3'- -GCUAGcGCUGUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 28269 0.67 0.921427
Target:  5'- -cGUCGCGGCuuCGac-UCGugGACGg -3'
miRNA:   3'- gcUAGCGCUGuuGCcauAGCugCUGC- -5'
16296 3' -51.2 NC_004084.1 + 20040 0.67 0.921427
Target:  5'- aCGAUCGCGucucgucaguCGAUGcUGUCGAuacCGACGa -3'
miRNA:   3'- -GCUAGCGCu---------GUUGCcAUAGCU---GCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.