miRNA display CGI


Results 81 - 100 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 20040 0.67 0.921427
Target:  5'- aCGAUCGCGucucgucaguCGAUGcUGUCGAuacCGACGa -3'
miRNA:   3'- -GCUAGCGCu---------GUUGCcAUAGCU---GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 28269 0.67 0.921427
Target:  5'- -cGUCGCGGCuuCGac-UCGugGACGg -3'
miRNA:   3'- gcUAGCGCUGuuGCcauAGCugCUGC- -5'
16296 3' -51.2 NC_004084.1 + 47918 0.66 0.925549
Target:  5'- gCGAggugccgCGCGAUccagggcaauggcgAGCGGUGUaCGaACGACGu -3'
miRNA:   3'- -GCUa------GCGCUG--------------UUGCCAUA-GC-UGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 17550 0.66 0.927274
Target:  5'- aCGAgcgUCGaCGACAGCGGag-CGugGgACGc -3'
miRNA:   3'- -GCU---AGC-GCUGUUGCCauaGCugC-UGC- -5'
16296 3' -51.2 NC_004084.1 + 54113 0.66 0.927274
Target:  5'- aCGAcgccCGCGAucacCGGCGGgacGUCGugGACu -3'
miRNA:   3'- -GCUa---GCGCU----GUUGCCa--UAGCugCUGc -5'
16296 3' -51.2 NC_004084.1 + 13125 0.66 0.927274
Target:  5'- gCGGUCG-GACGAagacuUCGACGGCGa -3'
miRNA:   3'- -GCUAGCgCUGUUgccauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 35511 0.66 0.927274
Target:  5'- aCGGUCGCGAgugggaCAuccuGCGcGUGaucgaggaccUCGGCGGCGa -3'
miRNA:   3'- -GCUAGCGCU------GU----UGC-CAU----------AGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 38335 0.66 0.929536
Target:  5'- aCGGUCGUcuuccgguucgcuccGGCGucguCGGUAUCGACaGCa -3'
miRNA:   3'- -GCUAGCG---------------CUGUu---GCCAUAGCUGcUGc -5'
16296 3' -51.2 NC_004084.1 + 32365 0.66 0.932845
Target:  5'- --cUCGU-ACAGCGGUGa-GACGACGa -3'
miRNA:   3'- gcuAGCGcUGUUGCCAUagCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 17287 0.66 0.932845
Target:  5'- gGAggcgGUGGCGGCGGUggCGGCGAg- -3'
miRNA:   3'- gCUag--CGCUGUUGCCAuaGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 11183 0.66 0.932845
Target:  5'- aCGAUCGCGgucgaaGCAGCGuGg---GACGACa -3'
miRNA:   3'- -GCUAGCGC------UGUUGC-CauagCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 21792 0.66 0.938139
Target:  5'- aCGAUCGCGAgccgaugcaccuCAACGucagCGuCGACGg -3'
miRNA:   3'- -GCUAGCGCU------------GUUGCcauaGCuGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 13719 0.66 0.938139
Target:  5'- aGAUCccCGACuccguugaaGGUAUCGACGAUa -3'
miRNA:   3'- gCUAGc-GCUGuug------CCAUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 3459 0.66 0.940179
Target:  5'- gGAUCGCGAgCGccgggggaauacggaACGGcguUCGACGuCGa -3'
miRNA:   3'- gCUAGCGCU-GU---------------UGCCau-AGCUGCuGC- -5'
16296 3' -51.2 NC_004084.1 + 22463 0.66 0.943157
Target:  5'- gCGcUCGCGACGGCuGcGUggUGGCGGCu -3'
miRNA:   3'- -GCuAGCGCUGUUG-C-CAuaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 15737 0.66 0.943157
Target:  5'- uGAUCGCuGGCAGCcucgcgccGaGUAuucaggcucUCGACGGCGa -3'
miRNA:   3'- gCUAGCG-CUGUUG--------C-CAU---------AGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 44253 0.66 0.943157
Target:  5'- aCGA-CGgGACGAcCGGccuucaCGACGACGg -3'
miRNA:   3'- -GCUaGCgCUGUU-GCCaua---GCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 34566 0.66 0.943157
Target:  5'- -cAUCGCGAgGGCGcuggCGGCGACu -3'
miRNA:   3'- gcUAGCGCUgUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 14288 0.66 0.943157
Target:  5'- -cGUCGCGA--GCGGcuUCGugGACu -3'
miRNA:   3'- gcUAGCGCUguUGCCauAGCugCUGc -5'
16296 3' -51.2 NC_004084.1 + 11406 0.66 0.946508
Target:  5'- uCGAUCGCGACGuccucgaggaacucGCGGUcgucUCGAaguucgUGACu -3'
miRNA:   3'- -GCUAGCGCUGU--------------UGCCAu---AGCU------GCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.