Results 101 - 105 of 105 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 16296 | 3' | -51.2 | NC_004084.1 | + | 5678 | 0.66 | 0.947441 |
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Target: 5'- -cGUCGaCGA-GACGGUGaagauacUCGACGAUGg -3' miRNA: 3'- gcUAGC-GCUgUUGCCAU-------AGCUGCUGC- -5' |
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| 16296 | 3' | -51.2 | NC_004084.1 | + | 7236 | 0.66 | 0.947903 |
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Target: 5'- cCGAccUCGaCGAuCGGCGcGUGcUCGGCGACc -3' miRNA: 3'- -GCU--AGC-GCU-GUUGC-CAU-AGCUGCUGc -5' |
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| 16296 | 3' | -51.2 | NC_004084.1 | + | 17328 | 0.66 | 0.947903 |
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Target: 5'- ---cCGCGGCGACGGcccgcAUCGucucguCGACGu -3' miRNA: 3'- gcuaGCGCUGUUGCCa----UAGCu-----GCUGC- -5' |
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| 16296 | 3' | -51.2 | NC_004084.1 | + | 50908 | 0.66 | 0.952379 |
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Target: 5'- gCGAUgGCccaGCAGCGG-AUCGGCcucGACGu -3' miRNA: 3'- -GCUAgCGc--UGUUGCCaUAGCUG---CUGC- -5' |
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| 16296 | 3' | -51.2 | NC_004084.1 | + | 53320 | 0.66 | 0.952379 |
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Target: 5'- gCGAUCGCGGgcuCGGUucacgucuUCGAgGugGa -3' miRNA: 3'- -GCUAGCGCUguuGCCAu-------AGCUgCugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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