Results 61 - 80 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 57402 | 0.7 | 0.802726 |
Target: 5'- cCGAUCGCGuCGACG---UCGcCGGCGa -3' miRNA: 3'- -GCUAGCGCuGUUGCcauAGCuGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 39716 | 0.7 | 0.802726 |
Target: 5'- uGAcgGCGACGACGccGUCGACGAgGa -3' miRNA: 3'- gCUagCGCUGUUGCcaUAGCUGCUgC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 33103 | 0.7 | 0.793048 |
Target: 5'- gGggCGCGACGGCGGccUCuGCGGCu -3' miRNA: 3'- gCuaGCGCUGUUGCCauAGcUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 5740 | 0.7 | 0.793048 |
Target: 5'- uCGAUCGgGAUGAUcGccUCGACGACGa -3' miRNA: 3'- -GCUAGCgCUGUUGcCauAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 29395 | 0.7 | 0.790112 |
Target: 5'- aCGGUCGgGcggccacuccugggGCGucGCGGUugccGUCGACGGCGa -3' miRNA: 3'- -GCUAGCgC--------------UGU--UGCCA----UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 1973 | 0.7 | 0.784194 |
Target: 5'- uGAUCGagGACAACGGgaugcagacuacgucGUCGAgGACGc -3' miRNA: 3'- gCUAGCg-CUGUUGCCa--------------UAGCUgCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 6246 | 0.7 | 0.783202 |
Target: 5'- uCGAUCcCGAC-GCGG--UCGACGAUGa -3' miRNA: 3'- -GCUAGcGCUGuUGCCauAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 17251 | 0.7 | 0.783202 |
Target: 5'- gGAUCuGCGGC--CGGUgcaGUCGGCGAUGc -3' miRNA: 3'- gCUAG-CGCUGuuGCCA---UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 52577 | 0.7 | 0.783202 |
Target: 5'- uGAUCGCGACGugcuUGGUAaa-GCGACGc -3' miRNA: 3'- gCUAGCGCUGUu---GCCAUagcUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 53230 | 0.7 | 0.773199 |
Target: 5'- -cGUCGUGuCAucuacgagcggGCGGUcGUCGACGGCGa -3' miRNA: 3'- gcUAGCGCuGU-----------UGCCA-UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 49587 | 0.7 | 0.773199 |
Target: 5'- ---cUGCGACcACuGUGUCGGCGACa -3' miRNA: 3'- gcuaGCGCUGuUGcCAUAGCUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 6318 | 0.7 | 0.773199 |
Target: 5'- cCGA-CGuCGACAucccgGCGGUaacGUCGGCGAUGu -3' miRNA: 3'- -GCUaGC-GCUGU-----UGCCA---UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 47405 | 0.7 | 0.769156 |
Target: 5'- aGggCGCGACGACGaagccgaaggacGUCGGCGACa -3' miRNA: 3'- gCuaGCGCUGUUGCca----------UAGCUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 2429 | 0.7 | 0.763049 |
Target: 5'- gCGAUCGUGG--GCGGUgaAUCGAccguCGACGa -3' miRNA: 3'- -GCUAGCGCUguUGCCA--UAGCU----GCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 21974 | 0.7 | 0.763049 |
Target: 5'- aGAUCGacacggugcaGACGGCGuacGUCGACGACGc -3' miRNA: 3'- gCUAGCg---------CUGUUGCca-UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 22992 | 0.7 | 0.763049 |
Target: 5'- uCGAccUCGCGA--GCGaG-AUCGACGACGa -3' miRNA: 3'- -GCU--AGCGCUguUGC-CaUAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 57623 | 0.71 | 0.756894 |
Target: 5'- aCGAUCGCcucgaccaacacaagGGCGACGaugaAUCGugGACGg -3' miRNA: 3'- -GCUAGCG---------------CUGUUGCca--UAGCugCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 7065 | 0.71 | 0.752765 |
Target: 5'- uGGcCGCGAucCAGCGGU-UCGugGACa -3' miRNA: 3'- gCUaGCGCU--GUUGCCAuAGCugCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 45169 | 0.71 | 0.752765 |
Target: 5'- uCGAUCcCGACGACGGUGaguaCGGCaACGa -3' miRNA: 3'- -GCUAGcGCUGUUGCCAUa---GCUGcUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 56440 | 0.71 | 0.752765 |
Target: 5'- -cGUCGCGaACGACGaucUCGACGGCGc -3' miRNA: 3'- gcUAGCGC-UGUUGCcauAGCUGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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