miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 848 0.67 0.908248
Target:  5'- ---gCGUGACAugGGUguggaaagagucaGUCGuCGACGu -3'
miRNA:   3'- gcuaGCGCUGUugCCA-------------UAGCuGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 1720 0.67 0.921427
Target:  5'- uGGUCGCGGCGAgucgagcgUGGcGUaGAUGACGa -3'
miRNA:   3'- gCUAGCGCUGUU--------GCCaUAgCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 1973 0.7 0.784194
Target:  5'- uGAUCGagGACAACGGgaugcagacuacgucGUCGAgGACGc -3'
miRNA:   3'- gCUAGCg-CUGUUGCCa--------------UAGCUgCUGC- -5'
16296 3' -51.2 NC_004084.1 + 2429 0.7 0.763049
Target:  5'- gCGAUCGUGG--GCGGUgaAUCGAccguCGACGa -3'
miRNA:   3'- -GCUAGCGCUguUGCCA--UAGCU----GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 2891 0.71 0.741311
Target:  5'- gCGAUCGCGGaggaucccaucauCAacGCGGUGcCGACGAgGa -3'
miRNA:   3'- -GCUAGCGCU-------------GU--UGCCAUaGCUGCUgC- -5'
16296 3' -51.2 NC_004084.1 + 3459 0.66 0.940179
Target:  5'- gGAUCGCGAgCGccgggggaauacggaACGGcguUCGACGuCGa -3'
miRNA:   3'- gCUAGCGCU-GU---------------UGCCau-AGCUGCuGC- -5'
16296 3' -51.2 NC_004084.1 + 3962 0.67 0.895287
Target:  5'- aCGAUcCGCGGCGACaGUG-CGGCG-Ca -3'
miRNA:   3'- -GCUA-GCGCUGUUGcCAUaGCUGCuGc -5'
16296 3' -51.2 NC_004084.1 + 4205 0.67 0.908903
Target:  5'- aGAUC-CGACucgagccgcuGACGGUcggaAUCGACGAgGa -3'
miRNA:   3'- gCUAGcGCUG----------UUGCCA----UAGCUGCUgC- -5'
16296 3' -51.2 NC_004084.1 + 5235 0.68 0.854171
Target:  5'- -aGUCGCGACGgacgaacacgcuGgGGUcagucaucggccucGUCGACGACGu -3'
miRNA:   3'- gcUAGCGCUGU------------UgCCA--------------UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 5470 0.67 0.915302
Target:  5'- aCGAUCaCGACGACGc---CGACGGCc -3'
miRNA:   3'- -GCUAGcGCUGUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 5678 0.66 0.947441
Target:  5'- -cGUCGaCGA-GACGGUGaagauacUCGACGAUGg -3'
miRNA:   3'- gcUAGC-GCUgUUGCCAU-------AGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 5740 0.7 0.793048
Target:  5'- uCGAUCGgGAUGAUcGccUCGACGACGa -3'
miRNA:   3'- -GCUAGCgCUGUUGcCauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 6246 0.7 0.783202
Target:  5'- uCGAUCcCGAC-GCGG--UCGACGAUGa -3'
miRNA:   3'- -GCUAGcGCUGuUGCCauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 6318 0.7 0.773199
Target:  5'- cCGA-CGuCGACAucccgGCGGUaacGUCGGCGAUGu -3'
miRNA:   3'- -GCUaGC-GCUGU-----UGCCA---UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 7065 0.71 0.752765
Target:  5'- uGGcCGCGAucCAGCGGU-UCGugGACa -3'
miRNA:   3'- gCUaGCGCU--GUUGCCAuAGCugCUGc -5'
16296 3' -51.2 NC_004084.1 + 7236 0.66 0.947903
Target:  5'- cCGAccUCGaCGAuCGGCGcGUGcUCGGCGACc -3'
miRNA:   3'- -GCU--AGC-GCU-GUUGC-CAU-AGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 7415 0.69 0.836898
Target:  5'- gCGAUCGaCGACGagggcgaugccgACGGUggcgagaccucggaGUCcGACGGCGa -3'
miRNA:   3'- -GCUAGC-GCUGU------------UGCCA--------------UAG-CUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 8843 0.71 0.710513
Target:  5'- --cUCGuCGACGaaaaGCGGUacuucgaguacGUCGACGACGg -3'
miRNA:   3'- gcuAGC-GCUGU----UGCCA-----------UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 11183 0.66 0.932845
Target:  5'- aCGAUCGCGgucgaaGCAGCGuGg---GACGACa -3'
miRNA:   3'- -GCUAGCGC------UGUUGC-CauagCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 11406 0.66 0.946508
Target:  5'- uCGAUCGCGACGuccucgaggaacucGCGGUcgucUCGAaguucgUGACu -3'
miRNA:   3'- -GCUAGCGCUGU--------------UGCCAu---AGCU------GCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.