Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 12110 | 0.73 | 0.601006 |
Target: 5'- uGAUCGCGA--ACGGagucaacGUCGACGACu -3' miRNA: 3'- gCUAGCGCUguUGCCa------UAGCUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 13125 | 0.66 | 0.927274 |
Target: 5'- gCGGUCG-GACGAagacuUCGACGGCGa -3' miRNA: 3'- -GCUAGCgCUGUUgccauAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 13719 | 0.66 | 0.938139 |
Target: 5'- aGAUCccCGACuccguugaaGGUAUCGACGAUa -3' miRNA: 3'- gCUAGc-GCUGuug------CCAUAGCUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 13803 | 0.68 | 0.864903 |
Target: 5'- uGGUCGCGACcgaggcgauCGGcccacUCGGCGAUGa -3' miRNA: 3'- gCUAGCGCUGuu-------GCCau---AGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 14288 | 0.66 | 0.943157 |
Target: 5'- -cGUCGCGA--GCGGcuUCGugGACu -3' miRNA: 3'- gcUAGCGCUguUGCCauAGCugCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 15737 | 0.66 | 0.943157 |
Target: 5'- uGAUCGCuGGCAGCcucgcgccGaGUAuucaggcucUCGACGGCGa -3' miRNA: 3'- gCUAGCG-CUGUUG--------C-CAU---------AGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 16404 | 0.72 | 0.682341 |
Target: 5'- uCGcUCGCGACGgccacucgagcaaagACGGcGUCGAUGugGg -3' miRNA: 3'- -GCuAGCGCUGU---------------UGCCaUAGCUGCugC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 16516 | 0.78 | 0.378369 |
Target: 5'- gCGAUCGCGuCGccGCGGUcGUCGugGACc -3' miRNA: 3'- -GCUAGCGCuGU--UGCCA-UAGCugCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 16631 | 0.68 | 0.888077 |
Target: 5'- uCGAUCGUGACGcccuCGucGUCGACGuCGu -3' miRNA: 3'- -GCUAGCGCUGUu---GCcaUAGCUGCuGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 16917 | 0.73 | 0.634024 |
Target: 5'- gCGAUCGUGGCcggguGCGGUucggcAUCGGCgGGCGu -3' miRNA: 3'- -GCUAGCGCUGu----UGCCA-----UAGCUG-CUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 17161 | 0.68 | 0.888077 |
Target: 5'- aCGAUCGcCGGCGACG---UCGAaGGCGa -3' miRNA: 3'- -GCUAGC-GCUGUUGCcauAGCUgCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 17251 | 0.7 | 0.783202 |
Target: 5'- gGAUCuGCGGC--CGGUgcaGUCGGCGAUGc -3' miRNA: 3'- gCUAG-CGCUGuuGCCA---UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 17287 | 0.66 | 0.932845 |
Target: 5'- gGAggcgGUGGCGGCGGUggCGGCGAg- -3' miRNA: 3'- gCUag--CGCUGUUGCCAuaGCUGCUgc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 17328 | 0.66 | 0.947903 |
Target: 5'- ---cCGCGGCGACGGcccgcAUCGucucguCGACGu -3' miRNA: 3'- gcuaGCGCUGUUGCCa----UAGCu-----GCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 17550 | 0.66 | 0.927274 |
Target: 5'- aCGAgcgUCGaCGACAGCGGag-CGugGgACGc -3' miRNA: 3'- -GCU---AGC-GCUGUUGCCauaGCugC-UGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 18103 | 0.67 | 0.921427 |
Target: 5'- aCGAUCGaugccagGACAGCGGUucgCGAUccgGAUGg -3' miRNA: 3'- -GCUAGCg------CUGUUGCCAua-GCUG---CUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 18348 | 0.67 | 0.90223 |
Target: 5'- uCGAccaUCcCGACGuucGCGGgGUCGACGGCu -3' miRNA: 3'- -GCU---AGcGCUGU---UGCCaUAGCUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 18454 | 0.69 | 0.845647 |
Target: 5'- aCGAaaucgaGCGAUGACccgcucgaguucgaGGUGUCGACGugGa -3' miRNA: 3'- -GCUag----CGCUGUUG--------------CCAUAGCUGCugC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 19137 | 0.68 | 0.880607 |
Target: 5'- aCGAUCGaguccGCGACGcG-AUCGACGACc -3' miRNA: 3'- -GCUAGCgc---UGUUGC-CaUAGCUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 20040 | 0.67 | 0.921427 |
Target: 5'- aCGAUCGCGucucgucaguCGAUGcUGUCGAuacCGACGa -3' miRNA: 3'- -GCUAGCGCu---------GUUGCcAUAGCU---GCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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