miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 20725 0.72 0.699728
Target:  5'- gGAUCcCGuuGcUGGUGUCGACGACGu -3'
miRNA:   3'- gCUAGcGCugUuGCCAUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 21792 0.66 0.938139
Target:  5'- aCGAUCGCGAgccgaugcaccuCAACGucagCGuCGACGg -3'
miRNA:   3'- -GCUAGCGCU------------GUUGCcauaGCuGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 21974 0.7 0.763049
Target:  5'- aGAUCGacacggugcaGACGGCGuacGUCGACGACGc -3'
miRNA:   3'- gCUAGCg---------CUGUUGCca-UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 22463 0.66 0.943157
Target:  5'- gCGcUCGCGACGGCuGcGUggUGGCGGCu -3'
miRNA:   3'- -GCuAGCGCUGUUG-C-CAuaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 22992 0.7 0.763049
Target:  5'- uCGAccUCGCGA--GCGaG-AUCGACGACGa -3'
miRNA:   3'- -GCU--AGCGCUguUGC-CaUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 23077 0.73 0.645039
Target:  5'- gCGA-CGCGACGA-GGUggacGUCGGCGACc -3'
miRNA:   3'- -GCUaGCGCUGUUgCCA----UAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 23199 0.69 0.839545
Target:  5'- uCGAUCGCGAUcguCGGc-UCGAuccCGACGa -3'
miRNA:   3'- -GCUAGCGCUGuu-GCCauAGCU---GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 23358 0.69 0.812225
Target:  5'- aCGAUgGCGACcgccugcCGGUAUCaGGCGAUc -3'
miRNA:   3'- -GCUAgCGCUGuu-----GCCAUAG-CUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 25102 0.67 0.90223
Target:  5'- ---aCGCGGCGGCGGcaggUGUUGACGcucaACGg -3'
miRNA:   3'- gcuaGCGCUGUUGCC----AUAGCUGC----UGC- -5'
16296 3' -51.2 NC_004084.1 + 26120 0.68 0.880607
Target:  5'- cCGGUCGCGACGaucGCGuUGUCGGUGAg- -3'
miRNA:   3'- -GCUAGCGCUGU---UGCcAUAGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 26896 0.72 0.688878
Target:  5'- gCGAUCGCGGCAuccaucGCGauaGUGgaggCGGCGACu -3'
miRNA:   3'- -GCUAGCGCUGU------UGC---CAUa---GCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 27061 0.75 0.493894
Target:  5'- uCGAUCGCG-CGAUGcucgacGUCGACGACGa -3'
miRNA:   3'- -GCUAGCGCuGUUGCca----UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 27189 0.74 0.572575
Target:  5'- aCGAUCGCGACGcugaaugcguaccucGaGGUucgCGACGACGu -3'
miRNA:   3'- -GCUAGCGCUGU---------------UgCCAua-GCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 27293 0.69 0.830645
Target:  5'- aCGAUCGCGGCGcCGcUGUucaucauccUGGCGACGu -3'
miRNA:   3'- -GCUAGCGCUGUuGCcAUA---------GCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 27804 0.68 0.856683
Target:  5'- uGAUCGCGAagggGAUGGacAUCGACcGCGg -3'
miRNA:   3'- gCUAGCGCUg---UUGCCa-UAGCUGcUGC- -5'
16296 3' -51.2 NC_004084.1 + 28269 0.67 0.921427
Target:  5'- -cGUCGCGGCuuCGac-UCGugGACGg -3'
miRNA:   3'- gcUAGCGCUGuuGCcauAGCugCUGC- -5'
16296 3' -51.2 NC_004084.1 + 29395 0.7 0.790112
Target:  5'- aCGGUCGgGcggccacuccugggGCGucGCGGUugccGUCGACGGCGa -3'
miRNA:   3'- -GCUAGCgC--------------UGU--UGCCA----UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 29600 0.68 0.87288
Target:  5'- cCGGUCGCGAugcucgcccaCAACGGcaccuggcUGUCGGCuccgGACGu -3'
miRNA:   3'- -GCUAGCGCU----------GUUGCC--------AUAGCUG----CUGC- -5'
16296 3' -51.2 NC_004084.1 + 30419 0.71 0.72122
Target:  5'- uCGAcggGCGGCGACGGaagCGAUGGCGa -3'
miRNA:   3'- -GCUag-CGCUGUUGCCauaGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 30570 0.75 0.525281
Target:  5'- -cAUCGCGGCGACGG--UCGGCGAa- -3'
miRNA:   3'- gcUAGCGCUGUUGCCauAGCUGCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.