miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 32365 0.66 0.932845
Target:  5'- --cUCGU-ACAGCGGUGa-GACGACGa -3'
miRNA:   3'- gcuAGCGcUGUUGCCAUagCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 33103 0.7 0.793048
Target:  5'- gGggCGCGACGGCGGccUCuGCGGCu -3'
miRNA:   3'- gCuaGCGCUGUUGCCauAGcUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 33643 0.67 0.915302
Target:  5'- gGAUCauCGACAGCaGUGUCGAuCGAUu -3'
miRNA:   3'- gCUAGc-GCUGUUGcCAUAGCU-GCUGc -5'
16296 3' -51.2 NC_004084.1 + 34566 0.66 0.943157
Target:  5'- -cAUCGCGAgGGCGcuggCGGCGACu -3'
miRNA:   3'- gcUAGCGCUgUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 35229 0.67 0.908903
Target:  5'- aCGAUCGCGAuCGACG---UCGACcaccucuggGACGa -3'
miRNA:   3'- -GCUAGCGCU-GUUGCcauAGCUG---------CUGC- -5'
16296 3' -51.2 NC_004084.1 + 35370 0.69 0.821535
Target:  5'- aCGAUCGCGAaguGCGccaagaucacGUCGACGACc -3'
miRNA:   3'- -GCUAGCGCUgu-UGCca--------UAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 35511 0.66 0.927274
Target:  5'- aCGGUCGCGAgugggaCAuccuGCGcGUGaucgaggaccUCGGCGGCGa -3'
miRNA:   3'- -GCUAGCGCU------GU----UGC-CAU----------AGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 36539 1.11 0.002919
Target:  5'- cCGAUCGCGACAACGGUAUCGACGACGg -3'
miRNA:   3'- -GCUAGCGCUGUUGCCAUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 37969 0.72 0.699728
Target:  5'- cCGGUCGcCGACugaGACGGU--UGACGACu -3'
miRNA:   3'- -GCUAGC-GCUG---UUGCCAuaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 38335 0.66 0.929536
Target:  5'- aCGGUCGUcuuccgguucgcuccGGCGucguCGGUAUCGACaGCa -3'
miRNA:   3'- -GCUAGCG---------------CUGUu---GCCAUAGCUGcUGc -5'
16296 3' -51.2 NC_004084.1 + 39716 0.7 0.802726
Target:  5'- uGAcgGCGACGACGccGUCGACGAgGa -3'
miRNA:   3'- gCUagCGCUGUUGCcaUAGCUGCUgC- -5'
16296 3' -51.2 NC_004084.1 + 41574 0.67 0.908248
Target:  5'- gCGAUCGCGuccgugaGCuAGCGGagAUCGuCGACu -3'
miRNA:   3'- -GCUAGCGC-------UG-UUGCCa-UAGCuGCUGc -5'
16296 3' -51.2 NC_004084.1 + 41619 0.72 0.68779
Target:  5'- aCGAaCGCGagGCGACGGUccgggacAUCGACGuCGa -3'
miRNA:   3'- -GCUaGCGC--UGUUGCCA-------UAGCUGCuGC- -5'
16296 3' -51.2 NC_004084.1 + 41745 0.76 0.433907
Target:  5'- aCGAUCGgGACGACGc---CGGCGACGa -3'
miRNA:   3'- -GCUAGCgCUGUUGCcauaGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 42315 0.79 0.304469
Target:  5'- aCGAUCGCGACGAccguCGGgacgagAUCGACGAgGc -3'
miRNA:   3'- -GCUAGCGCUGUU----GCCa-----UAGCUGCUgC- -5'
16296 3' -51.2 NC_004084.1 + 43680 0.67 0.915302
Target:  5'- cCGAgugccUGCGACgGACGGgcgcGUCGACGAa- -3'
miRNA:   3'- -GCUa----GCGCUG-UUGCCa---UAGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 44253 0.66 0.943157
Target:  5'- aCGA-CGgGACGAcCGGccuucaCGACGACGg -3'
miRNA:   3'- -GCUaGCgCUGUU-GCCaua---GCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 44354 0.68 0.888077
Target:  5'- uCGGUCGCgguGACAACGG---CGAgCGACa -3'
miRNA:   3'- -GCUAGCG---CUGUUGCCauaGCU-GCUGc -5'
16296 3' -51.2 NC_004084.1 + 44805 0.68 0.880607
Target:  5'- aCGGUCcCGACcacccggucgguGACGGUAUCGAgcUGACc -3'
miRNA:   3'- -GCUAGcGCUG------------UUGCCAUAGCU--GCUGc -5'
16296 3' -51.2 NC_004084.1 + 44904 0.68 0.878315
Target:  5'- uGAUCccgGCGACGACccgcgccuagcugaGGUGaCGAUGACGu -3'
miRNA:   3'- gCUAG---CGCUGUUG--------------CCAUaGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.