Results 101 - 105 of 105 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 16296 | 3' | -51.2 | NC_004084.1 | + | 56894 | 0.8 | 0.28314 |
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Target: 5'- gGAUCGuCGACAGCGGUGUagagguccucgucggGACGGCGg -3' miRNA: 3'- gCUAGC-GCUGUUGCCAUAg--------------CUGCUGC- -5' |
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| 16296 | 3' | -51.2 | NC_004084.1 | + | 57402 | 0.7 | 0.802726 |
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Target: 5'- cCGAUCGCGuCGACG---UCGcCGGCGa -3' miRNA: 3'- -GCUAGCGCuGUUGCcauAGCuGCUGC- -5' |
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| 16296 | 3' | -51.2 | NC_004084.1 | + | 57543 | 0.72 | 0.677973 |
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Target: 5'- cCGAUUcCGACGGCGacGUCGACGACu -3' miRNA: 3'- -GCUAGcGCUGUUGCcaUAGCUGCUGc -5' |
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| 16296 | 3' | -51.2 | NC_004084.1 | + | 57623 | 0.71 | 0.756894 |
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Target: 5'- aCGAUCGCcucgaccaacacaagGGCGACGaugaAUCGugGACGg -3' miRNA: 3'- -GCUAGCG---------------CUGUUGCca--UAGCugCUGC- -5' |
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| 16296 | 3' | -51.2 | NC_004084.1 | + | 58017 | 0.72 | 0.656043 |
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Target: 5'- aGAUCGaCGACGucuGCGacAUCGGCGGCGa -3' miRNA: 3'- gCUAGC-GCUGU---UGCcaUAGCUGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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