miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 58017 0.72 0.656043
Target:  5'- aGAUCGaCGACGucuGCGacAUCGGCGGCGa -3'
miRNA:   3'- gCUAGC-GCUGU---UGCcaUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 57623 0.71 0.756894
Target:  5'- aCGAUCGCcucgaccaacacaagGGCGACGaugaAUCGugGACGg -3'
miRNA:   3'- -GCUAGCG---------------CUGUUGCca--UAGCugCUGC- -5'
16296 3' -51.2 NC_004084.1 + 57543 0.72 0.677973
Target:  5'- cCGAUUcCGACGGCGacGUCGACGACu -3'
miRNA:   3'- -GCUAGcGCUGUUGCcaUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 57402 0.7 0.802726
Target:  5'- cCGAUCGCGuCGACG---UCGcCGGCGa -3'
miRNA:   3'- -GCUAGCGCuGUUGCcauAGCuGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 56894 0.8 0.28314
Target:  5'- gGAUCGuCGACAGCGGUGUagagguccucgucggGACGGCGg -3'
miRNA:   3'- gCUAGC-GCUGUUGCCAUAg--------------CUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 56440 0.71 0.752765
Target:  5'- -cGUCGCGaACGACGaucUCGACGGCGc -3'
miRNA:   3'- gcUAGCGC-UGUUGCcauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 56241 0.68 0.87288
Target:  5'- aGAUcCGUGACGACucccgugcuGGUGUCGccuacgaguACGACGu -3'
miRNA:   3'- gCUA-GCGCUGUUG---------CCAUAGC---------UGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 55254 0.67 0.90223
Target:  5'- -cGUCGaCGACGucuACGG--UCGGCGGCGu -3'
miRNA:   3'- gcUAGC-GCUGU---UGCCauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 54113 0.66 0.927274
Target:  5'- aCGAcgccCGCGAucacCGGCGGgacGUCGugGACu -3'
miRNA:   3'- -GCUa---GCGCU----GUUGCCa--UAGCugCUGc -5'
16296 3' -51.2 NC_004084.1 + 53320 0.66 0.952379
Target:  5'- gCGAUCGCGGgcuCGGUucacgucuUCGAgGugGa -3'
miRNA:   3'- -GCUAGCGCUguuGCCAu-------AGCUgCugC- -5'
16296 3' -51.2 NC_004084.1 + 53230 0.7 0.773199
Target:  5'- -cGUCGUGuCAucuacgagcggGCGGUcGUCGACGGCGa -3'
miRNA:   3'- gcUAGCGCuGU-----------UGCCA-UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 52577 0.7 0.783202
Target:  5'- uGAUCGCGACGugcuUGGUAaa-GCGACGc -3'
miRNA:   3'- gCUAGCGCUGUu---GCCAUagcUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 51454 0.69 0.830645
Target:  5'- gCGAgggcCGCGGCGGCuGUAcgggCGACGACc -3'
miRNA:   3'- -GCUa---GCGCUGUUGcCAUa---GCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 50908 0.66 0.952379
Target:  5'- gCGAUgGCccaGCAGCGG-AUCGGCcucGACGu -3'
miRNA:   3'- -GCUAgCGc--UGUUGCCaUAGCUG---CUGC- -5'
16296 3' -51.2 NC_004084.1 + 49782 0.76 0.443616
Target:  5'- -cAUCGCGAUuACGGaGUCGACGGCc -3'
miRNA:   3'- gcUAGCGCUGuUGCCaUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 49587 0.7 0.773199
Target:  5'- ---cUGCGACcACuGUGUCGGCGACa -3'
miRNA:   3'- gcuaGCGCUGuUGcCAUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 49343 0.68 0.856683
Target:  5'- gCGAUCGUGuCGA-GGUgAUCGuCGACGu -3'
miRNA:   3'- -GCUAGCGCuGUUgCCA-UAGCuGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 49016 0.67 0.911495
Target:  5'- uCGAUCGUGACcgacacgacguccugGACGGgacggGACGGCa -3'
miRNA:   3'- -GCUAGCGCUG---------------UUGCCauag-CUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 48876 0.67 0.915302
Target:  5'- cCGGggcUCGCGACGAUGca--CGACGGCa -3'
miRNA:   3'- -GCU---AGCGCUGUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 48662 0.72 0.656043
Target:  5'- gGAgCGCGACAucacgaaGGUcgCGACGugGg -3'
miRNA:   3'- gCUaGCGCUGUug-----CCAuaGCUGCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.