Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16296 | 3' | -51.2 | NC_004084.1 | + | 35229 | 0.67 | 0.908903 |
Target: 5'- aCGAUCGCGAuCGACG---UCGACcaccucuggGACGa -3' miRNA: 3'- -GCUAGCGCU-GUUGCcauAGCUG---------CUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 34566 | 0.66 | 0.943157 |
Target: 5'- -cAUCGCGAgGGCGcuggCGGCGACu -3' miRNA: 3'- gcUAGCGCUgUUGCcauaGCUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 33643 | 0.67 | 0.915302 |
Target: 5'- gGAUCauCGACAGCaGUGUCGAuCGAUu -3' miRNA: 3'- gCUAGc-GCUGUUGcCAUAGCU-GCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 33103 | 0.7 | 0.793048 |
Target: 5'- gGggCGCGACGGCGGccUCuGCGGCu -3' miRNA: 3'- gCuaGCGCUGUUGCCauAGcUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 32365 | 0.66 | 0.932845 |
Target: 5'- --cUCGU-ACAGCGGUGa-GACGACGa -3' miRNA: 3'- gcuAGCGcUGUUGCCAUagCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 30570 | 0.75 | 0.525281 |
Target: 5'- -cAUCGCGGCGACGG--UCGGCGAa- -3' miRNA: 3'- gcUAGCGCUGUUGCCauAGCUGCUgc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 30419 | 0.71 | 0.72122 |
Target: 5'- uCGAcggGCGGCGACGGaagCGAUGGCGa -3' miRNA: 3'- -GCUag-CGCUGUUGCCauaGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 29600 | 0.68 | 0.87288 |
Target: 5'- cCGGUCGCGAugcucgcccaCAACGGcaccuggcUGUCGGCuccgGACGu -3' miRNA: 3'- -GCUAGCGCU----------GUUGCC--------AUAGCUG----CUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 29395 | 0.7 | 0.790112 |
Target: 5'- aCGGUCGgGcggccacuccugggGCGucGCGGUugccGUCGACGGCGa -3' miRNA: 3'- -GCUAGCgC--------------UGU--UGCCA----UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 28269 | 0.67 | 0.921427 |
Target: 5'- -cGUCGCGGCuuCGac-UCGugGACGg -3' miRNA: 3'- gcUAGCGCUGuuGCcauAGCugCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 27804 | 0.68 | 0.856683 |
Target: 5'- uGAUCGCGAagggGAUGGacAUCGACcGCGg -3' miRNA: 3'- gCUAGCGCUg---UUGCCa-UAGCUGcUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 27293 | 0.69 | 0.830645 |
Target: 5'- aCGAUCGCGGCGcCGcUGUucaucauccUGGCGACGu -3' miRNA: 3'- -GCUAGCGCUGUuGCcAUA---------GCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 27189 | 0.74 | 0.572575 |
Target: 5'- aCGAUCGCGACGcugaaugcguaccucGaGGUucgCGACGACGu -3' miRNA: 3'- -GCUAGCGCUGU---------------UgCCAua-GCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 27061 | 0.75 | 0.493894 |
Target: 5'- uCGAUCGCG-CGAUGcucgacGUCGACGACGa -3' miRNA: 3'- -GCUAGCGCuGUUGCca----UAGCUGCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 26896 | 0.72 | 0.688878 |
Target: 5'- gCGAUCGCGGCAuccaucGCGauaGUGgaggCGGCGACu -3' miRNA: 3'- -GCUAGCGCUGU------UGC---CAUa---GCUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 26120 | 0.68 | 0.880607 |
Target: 5'- cCGGUCGCGACGaucGCGuUGUCGGUGAg- -3' miRNA: 3'- -GCUAGCGCUGU---UGCcAUAGCUGCUgc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 25102 | 0.67 | 0.90223 |
Target: 5'- ---aCGCGGCGGCGGcaggUGUUGACGcucaACGg -3' miRNA: 3'- gcuaGCGCUGUUGCC----AUAGCUGC----UGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 23358 | 0.69 | 0.812225 |
Target: 5'- aCGAUgGCGACcgccugcCGGUAUCaGGCGAUc -3' miRNA: 3'- -GCUAgCGCUGuu-----GCCAUAG-CUGCUGc -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 23199 | 0.69 | 0.839545 |
Target: 5'- uCGAUCGCGAUcguCGGc-UCGAuccCGACGa -3' miRNA: 3'- -GCUAGCGCUGuu-GCCauAGCU---GCUGC- -5' |
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16296 | 3' | -51.2 | NC_004084.1 | + | 23077 | 0.73 | 0.645039 |
Target: 5'- gCGA-CGCGACGA-GGUggacGUCGGCGACc -3' miRNA: 3'- -GCUaGCGCUGUUgCCA----UAGCUGCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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