miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 22992 0.7 0.763049
Target:  5'- uCGAccUCGCGA--GCGaG-AUCGACGACGa -3'
miRNA:   3'- -GCU--AGCGCUguUGC-CaUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 22463 0.66 0.943157
Target:  5'- gCGcUCGCGACGGCuGcGUggUGGCGGCu -3'
miRNA:   3'- -GCuAGCGCUGUUG-C-CAuaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 21974 0.7 0.763049
Target:  5'- aGAUCGacacggugcaGACGGCGuacGUCGACGACGc -3'
miRNA:   3'- gCUAGCg---------CUGUUGCca-UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 21792 0.66 0.938139
Target:  5'- aCGAUCGCGAgccgaugcaccuCAACGucagCGuCGACGg -3'
miRNA:   3'- -GCUAGCGCU------------GUUGCcauaGCuGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 20725 0.72 0.699728
Target:  5'- gGAUCcCGuuGcUGGUGUCGACGACGu -3'
miRNA:   3'- gCUAGcGCugUuGCCAUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 20040 0.67 0.921427
Target:  5'- aCGAUCGCGucucgucaguCGAUGcUGUCGAuacCGACGa -3'
miRNA:   3'- -GCUAGCGCu---------GUUGCcAUAGCU---GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 19137 0.68 0.880607
Target:  5'- aCGAUCGaguccGCGACGcG-AUCGACGACc -3'
miRNA:   3'- -GCUAGCgc---UGUUGC-CaUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 18454 0.69 0.845647
Target:  5'- aCGAaaucgaGCGAUGACccgcucgaguucgaGGUGUCGACGugGa -3'
miRNA:   3'- -GCUag----CGCUGUUG--------------CCAUAGCUGCugC- -5'
16296 3' -51.2 NC_004084.1 + 18348 0.67 0.90223
Target:  5'- uCGAccaUCcCGACGuucGCGGgGUCGACGGCu -3'
miRNA:   3'- -GCU---AGcGCUGU---UGCCaUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 18103 0.67 0.921427
Target:  5'- aCGAUCGaugccagGACAGCGGUucgCGAUccgGAUGg -3'
miRNA:   3'- -GCUAGCg------CUGUUGCCAua-GCUG---CUGC- -5'
16296 3' -51.2 NC_004084.1 + 17550 0.66 0.927274
Target:  5'- aCGAgcgUCGaCGACAGCGGag-CGugGgACGc -3'
miRNA:   3'- -GCU---AGC-GCUGUUGCCauaGCugC-UGC- -5'
16296 3' -51.2 NC_004084.1 + 17328 0.66 0.947903
Target:  5'- ---cCGCGGCGACGGcccgcAUCGucucguCGACGu -3'
miRNA:   3'- gcuaGCGCUGUUGCCa----UAGCu-----GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 17287 0.66 0.932845
Target:  5'- gGAggcgGUGGCGGCGGUggCGGCGAg- -3'
miRNA:   3'- gCUag--CGCUGUUGCCAuaGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 17251 0.7 0.783202
Target:  5'- gGAUCuGCGGC--CGGUgcaGUCGGCGAUGc -3'
miRNA:   3'- gCUAG-CGCUGuuGCCA---UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 17161 0.68 0.888077
Target:  5'- aCGAUCGcCGGCGACG---UCGAaGGCGa -3'
miRNA:   3'- -GCUAGC-GCUGUUGCcauAGCUgCUGC- -5'
16296 3' -51.2 NC_004084.1 + 16917 0.73 0.634024
Target:  5'- gCGAUCGUGGCcggguGCGGUucggcAUCGGCgGGCGu -3'
miRNA:   3'- -GCUAGCGCUGu----UGCCA-----UAGCUG-CUGC- -5'
16296 3' -51.2 NC_004084.1 + 16631 0.68 0.888077
Target:  5'- uCGAUCGUGACGcccuCGucGUCGACGuCGu -3'
miRNA:   3'- -GCUAGCGCUGUu---GCcaUAGCUGCuGC- -5'
16296 3' -51.2 NC_004084.1 + 16516 0.78 0.378369
Target:  5'- gCGAUCGCGuCGccGCGGUcGUCGugGACc -3'
miRNA:   3'- -GCUAGCGCuGU--UGCCA-UAGCugCUGc -5'
16296 3' -51.2 NC_004084.1 + 16404 0.72 0.682341
Target:  5'- uCGcUCGCGACGgccacucgagcaaagACGGcGUCGAUGugGg -3'
miRNA:   3'- -GCuAGCGCUGU---------------UGCCaUAGCUGCugC- -5'
16296 3' -51.2 NC_004084.1 + 15737 0.66 0.943157
Target:  5'- uGAUCGCuGGCAGCcucgcgccGaGUAuucaggcucUCGACGGCGa -3'
miRNA:   3'- gCUAGCG-CUGUUG--------C-CAU---------AGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.