miRNA display CGI


Results 81 - 100 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 27189 0.74 0.572575
Target:  5'- aCGAUCGCGACGcugaaugcguaccucGaGGUucgCGACGACGu -3'
miRNA:   3'- -GCUAGCGCUGU---------------UgCCAua-GCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 27061 0.75 0.493894
Target:  5'- uCGAUCGCG-CGAUGcucgacGUCGACGACGa -3'
miRNA:   3'- -GCUAGCGCuGUUGCca----UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 19137 0.68 0.880607
Target:  5'- aCGAUCGaguccGCGACGcG-AUCGACGACc -3'
miRNA:   3'- -GCUAGCgc---UGUUGC-CaUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 26120 0.68 0.880607
Target:  5'- cCGGUCGCGACGaucGCGuUGUCGGUGAg- -3'
miRNA:   3'- -GCUAGCGCUGU---UGCcAUAGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 16631 0.68 0.888077
Target:  5'- uCGAUCGUGACGcccuCGucGUCGACGuCGu -3'
miRNA:   3'- -GCUAGCGCUGUu---GCcaUAGCUGCuGC- -5'
16296 3' -51.2 NC_004084.1 + 17328 0.66 0.947903
Target:  5'- ---cCGCGGCGACGGcccgcAUCGucucguCGACGu -3'
miRNA:   3'- gcuaGCGCUGUUGCCa----UAGCu-----GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 11406 0.66 0.946508
Target:  5'- uCGAUCGCGACGuccucgaggaacucGCGGUcgucUCGAaguucgUGACu -3'
miRNA:   3'- -GCUAGCGCUGU--------------UGCCAu---AGCU------GCUGc -5'
16296 3' -51.2 NC_004084.1 + 34566 0.66 0.943157
Target:  5'- -cAUCGCGAgGGCGcuggCGGCGACu -3'
miRNA:   3'- gcUAGCGCUgUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 22463 0.66 0.943157
Target:  5'- gCGcUCGCGACGGCuGcGUggUGGCGGCu -3'
miRNA:   3'- -GCuAGCGCUGUUG-C-CAuaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 14288 0.66 0.943157
Target:  5'- -cGUCGCGA--GCGGcuUCGugGACu -3'
miRNA:   3'- gcUAGCGCUguUGCCauAGCugCUGc -5'
16296 3' -51.2 NC_004084.1 + 3459 0.66 0.940179
Target:  5'- gGAUCGCGAgCGccgggggaauacggaACGGcguUCGACGuCGa -3'
miRNA:   3'- gCUAGCGCU-GU---------------UGCCau-AGCUGCuGC- -5'
16296 3' -51.2 NC_004084.1 + 32365 0.66 0.932845
Target:  5'- --cUCGU-ACAGCGGUGa-GACGACGa -3'
miRNA:   3'- gcuAGCGcUGUUGCCAUagCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 38335 0.66 0.929536
Target:  5'- aCGGUCGUcuuccgguucgcuccGGCGucguCGGUAUCGACaGCa -3'
miRNA:   3'- -GCUAGCG---------------CUGUu---GCCAUAGCUGcUGc -5'
16296 3' -51.2 NC_004084.1 + 54113 0.66 0.927274
Target:  5'- aCGAcgccCGCGAucacCGGCGGgacGUCGugGACu -3'
miRNA:   3'- -GCUa---GCGCU----GUUGCCa--UAGCugCUGc -5'
16296 3' -51.2 NC_004084.1 + 1720 0.67 0.921427
Target:  5'- uGGUCGCGGCGAgucgagcgUGGcGUaGAUGACGa -3'
miRNA:   3'- gCUAGCGCUGUU--------GCCaUAgCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 33643 0.67 0.915302
Target:  5'- gGAUCauCGACAGCaGUGUCGAuCGAUu -3'
miRNA:   3'- gCUAGc-GCUGUUGcCAUAGCU-GCUGc -5'
16296 3' -51.2 NC_004084.1 + 49016 0.67 0.911495
Target:  5'- uCGAUCGUGACcgacacgacguccugGACGGgacggGACGGCa -3'
miRNA:   3'- -GCUAGCGCUG---------------UUGCCauag-CUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 848 0.67 0.908248
Target:  5'- ---gCGUGACAugGGUguggaaagagucaGUCGuCGACGu -3'
miRNA:   3'- gcuaGCGCUGUugCCA-------------UAGCuGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 55254 0.67 0.90223
Target:  5'- -cGUCGaCGACGucuACGG--UCGGCGGCGu -3'
miRNA:   3'- gcUAGC-GCUGU---UGCCauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 18348 0.67 0.90223
Target:  5'- uCGAccaUCcCGACGuucGCGGgGUCGACGGCu -3'
miRNA:   3'- -GCU---AGcGCUGU---UGCCaUAGCUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.