miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16296 3' -51.2 NC_004084.1 + 55254 0.67 0.90223
Target:  5'- -cGUCGaCGACGucuACGG--UCGGCGGCGu -3'
miRNA:   3'- gcUAGC-GCUGU---UGCCauAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 34566 0.66 0.943157
Target:  5'- -cAUCGCGAgGGCGcuggCGGCGACu -3'
miRNA:   3'- gcUAGCGCUgUUGCcauaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 27061 0.75 0.493894
Target:  5'- uCGAUCGCG-CGAUGcucgacGUCGACGACGa -3'
miRNA:   3'- -GCUAGCGCuGUUGCca----UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 52577 0.7 0.783202
Target:  5'- uGAUCGCGACGugcuUGGUAaa-GCGACGc -3'
miRNA:   3'- gCUAGCGCUGUu---GCCAUagcUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 26120 0.68 0.880607
Target:  5'- cCGGUCGCGACGaucGCGuUGUCGGUGAg- -3'
miRNA:   3'- -GCUAGCGCUGU---UGCcAUAGCUGCUgc -5'
16296 3' -51.2 NC_004084.1 + 11406 0.66 0.946508
Target:  5'- uCGAUCGCGACGuccucgaggaacucGCGGUcgucUCGAaguucgUGACu -3'
miRNA:   3'- -GCUAGCGCUGU--------------UGCCAu---AGCU------GCUGc -5'
16296 3' -51.2 NC_004084.1 + 29395 0.7 0.790112
Target:  5'- aCGGUCGgGcggccacuccugggGCGucGCGGUugccGUCGACGGCGa -3'
miRNA:   3'- -GCUAGCgC--------------UGU--UGCCA----UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 17328 0.66 0.947903
Target:  5'- ---cCGCGGCGACGGcccgcAUCGucucguCGACGu -3'
miRNA:   3'- gcuaGCGCUGUUGCCa----UAGCu-----GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 7236 0.66 0.947903
Target:  5'- cCGAccUCGaCGAuCGGCGcGUGcUCGGCGACc -3'
miRNA:   3'- -GCU--AGC-GCU-GUUGC-CAU-AGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 1720 0.67 0.921427
Target:  5'- uGGUCGCGGCGAgucgagcgUGGcGUaGAUGACGa -3'
miRNA:   3'- gCUAGCGCUGUU--------GCCaUAgCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 19137 0.68 0.880607
Target:  5'- aCGAUCGaguccGCGACGcG-AUCGACGACc -3'
miRNA:   3'- -GCUAGCgc---UGUUGC-CaUAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 36539 1.11 0.002919
Target:  5'- cCGAUCGCGACAACGGUAUCGACGACGg -3'
miRNA:   3'- -GCUAGCGCUGUUGCCAUAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 23199 0.69 0.839545
Target:  5'- uCGAUCGCGAUcguCGGc-UCGAuccCGACGa -3'
miRNA:   3'- -GCUAGCGCUGuu-GCCauAGCU---GCUGC- -5'
16296 3' -51.2 NC_004084.1 + 46402 0.71 0.752765
Target:  5'- aCGAUCgGCGACGGCGaaguUGUUGACGuCGc -3'
miRNA:   3'- -GCUAG-CGCUGUUGCc---AUAGCUGCuGC- -5'
16296 3' -51.2 NC_004084.1 + 23077 0.73 0.645039
Target:  5'- gCGA-CGCGACGA-GGUggacGUCGGCGACc -3'
miRNA:   3'- -GCUaGCGCUGUUgCCA----UAGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 46497 0.76 0.433907
Target:  5'- uGGUCGCGACGucgcCGGUcgccgaGUUGAUGACGa -3'
miRNA:   3'- gCUAGCGCUGUu---GCCA------UAGCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 33643 0.67 0.915302
Target:  5'- gGAUCauCGACAGCaGUGUCGAuCGAUu -3'
miRNA:   3'- gCUAGc-GCUGUUGcCAUAGCU-GCUGc -5'
16296 3' -51.2 NC_004084.1 + 22463 0.66 0.943157
Target:  5'- gCGcUCGCGACGGCuGcGUggUGGCGGCu -3'
miRNA:   3'- -GCuAGCGCUGUUG-C-CAuaGCUGCUGc -5'
16296 3' -51.2 NC_004084.1 + 32365 0.66 0.932845
Target:  5'- --cUCGU-ACAGCGGUGa-GACGACGa -3'
miRNA:   3'- gcuAGCGcUGUUGCCAUagCUGCUGC- -5'
16296 3' -51.2 NC_004084.1 + 57402 0.7 0.802726
Target:  5'- cCGAUCGCGuCGACG---UCGcCGGCGa -3'
miRNA:   3'- -GCUAGCGCuGUUGCcauAGCuGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.